| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,379,288 – 17,379,389 |
| Length | 101 |
| Max. P | 0.856874 |
| Location | 17,379,288 – 17,379,389 |
|---|---|
| Length | 101 |
| Sequences | 4 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 73.06 |
| Shannon entropy | 0.41567 |
| G+C content | 0.33751 |
| Mean single sequence MFE | -18.00 |
| Consensus MFE | -7.14 |
| Energy contribution | -8.26 |
| Covariance contribution | 1.12 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.61 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.94 |
| SVM RNA-class probability | 0.856874 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17379288 101 - 22422827 -------CAAUAACUCAAAGCCAACAACACCUAAAACACAG---UCAUGUUUAAAGUGGAGCAAAUAAAUCAAAUAUUUUAGGUAUACAAACAUAUACCGUGUUUAAGCCG -------.......................((.((((((..---...(((((......)))))..................((((((......)))))))))))).))... ( -14.90, z-score = -1.70, R) >droYak2.chrX 16007086 110 - 21770863 CCCCAUAACUCAGCUCAAAACAAACAACACCUAAAAAACGGUCAUCAUGUUUAAACUGGAGUAAAUACAUCGAGUAUUUCAGAUAUAUAGG-GUAUCAGGUAUUUAAGCCU .(((...((((......(((((......(((........))).....)))))......))))((((((.....))))))..........))-)....((((......)))) ( -17.50, z-score = -0.85, R) >droSec1.super_17 1225036 89 - 1527944 ----------CAAAAAAAAGUCAACAAAACCUAAAACACGG---UCAUGUUUAAGCUGGAGCAAAUAAAUCAAAUAUUUCAG--AUACGAACAUAUACCGUGUU------- ----------........................(((((((---(.((((((...((((((...............))))))--....))))))..))))))))------- ( -17.46, z-score = -3.59, R) >droSim1.chrX 3505473 96 + 17042790 ----------CAAAAAAAAGCCAACAAAACCUAAAACACGG---UCAUGUUUGAGCUGGAGCAAAUAAAUCAAAUAUUUCAG--AUACGAACAUAUACCGUGUUUAAGCCG ----------....................((.((((((((---(.(((((((..((((((...............))))))--...)))))))..))))))))).))... ( -22.16, z-score = -4.32, R) >consensus __________CAAAAAAAAGCCAACAAAACCUAAAACACGG___UCAUGUUUAAACUGGAGCAAAUAAAUCAAAUAUUUCAG__AUACAAACAUAUACCGUGUUUAAGCCG .................................((((((((.....(((((((..((((((...............)))))).....)))))))...))))))))...... ( -7.14 = -8.26 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:52:55 2011