| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,374,823 – 17,374,937 |
| Length | 114 |
| Max. P | 0.943487 |
| Location | 17,374,823 – 17,374,937 |
|---|---|
| Length | 114 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 82.91 |
| Shannon entropy | 0.29883 |
| G+C content | 0.41201 |
| Mean single sequence MFE | -29.44 |
| Consensus MFE | -21.72 |
| Energy contribution | -21.80 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.49 |
| SVM RNA-class probability | 0.943487 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17374823 114 + 22422827 GAGCCUCAUGUAGAAUGCGAUUAUUCUAGGCACGUGACUGGAAUUCACUUGAAUUCAGUUCAUUUCAAAAUAAGUAAAACCGAAGGAAUCUCGUUUAACAUGCAGGCUAACCGC .((((((((((.(((((.((((...........(((((((.(((((....)))))))).)))).................(....))))).))))).))))).)))))...... ( -29.70, z-score = -2.34, R) >droEre2.scaffold_4690 7714722 109 + 18748788 AAGCCUCGUGUAUACUGCGAUUGUUCUACGCACGUGACUAGAAUUCAGUUGGGCUCA-----UUUCAAAAUAGGCAAAACCGAAGGAAUCUUUUCCAGCAUGUAGGCUAACCGC .((((((((((.(((((((.........)))).))).......(((.(((..((..(-----((....)))..))..))).)))((((....)))).))))).)))))...... ( -29.00, z-score = -1.30, R) >droYak2.chrX 16002579 105 + 21770863 AAGCCUCAUGUAGAAUGCGAUUGUUUUACGCACGUGACUGGAAUUCAUUUCAAAAUA-----UGU----GUGUGCAAAACUGAAGGAAUCUUCUCCAACAUGUAGGCUAACUGC .((((((((((...........((((((((((((((....(((.....)))....))-----)))----)))))..))))....(((......))).))))).)))))...... ( -29.60, z-score = -2.57, R) >droSec1.super_17 1220629 114 + 1527944 GAGCCUCAUGUAGAAUGCGAUUAUUCUAGGCACGUGACUGGAAUUCAGUUGAAUUCAGUUCAUUUCAAAACAAGUAAAACCGAAGGAAUCUCGUUUAACAUGCAGGCUAACCGC .((((((((((.(((((.((((...........(((((((.(((((....)))))))).)))).................(....))))).))))).))))).)))))...... ( -29.70, z-score = -2.10, R) >droSim1.chrX 3500654 114 - 17042790 AAGCCUCAUGUAAAAUGCGAUUAUUCUAGGCACGUGACUGGAAUUCAGUUGAACUCAGUUCAUUUCAAAAUAAGUAAAACCGAAGGAAUCUCGUUUAACAUGCAGGCUAACCGC .((((((((((.(((((.(((((((((((........))))))).....(((((...)))))........................)))).))))).))))).)))))...... ( -29.20, z-score = -2.49, R) >consensus AAGCCUCAUGUAGAAUGCGAUUAUUCUAGGCACGUGACUGGAAUUCAGUUGAACUCAGUUCAUUUCAAAAUAAGUAAAACCGAAGGAAUCUCGUUUAACAUGCAGGCUAACCGC .((((((((((.(((((.(((((((((((........)))))))....................................(....))))).))))).))))).)))))...... (-21.72 = -21.80 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:52:54 2011