| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,366,867 – 17,366,962 |
| Length | 95 |
| Max. P | 0.897311 |
| Location | 17,366,867 – 17,366,962 |
|---|---|
| Length | 95 |
| Sequences | 3 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 64.00 |
| Shannon entropy | 0.48503 |
| G+C content | 0.29929 |
| Mean single sequence MFE | -19.00 |
| Consensus MFE | -4.91 |
| Energy contribution | -5.13 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.10 |
| Mean z-score | -3.18 |
| Structure conservation index | 0.26 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.13 |
| SVM RNA-class probability | 0.897311 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17366867 95 + 22422827 UUGAUUCAUUUAUUUAUAAAUGAAUCGAUUUUCGUUAUUCAAUUAUUACUAUGCCUUAAAUGCAUAGGUUGCCCUAUUUUUGGUAAUCCAUAUCU ((((((((((((....))))))))))))....................((((((.......))))))((((((........))))))........ ( -21.60, z-score = -3.94, R) >droSec1.super_17 1212926 85 + 1527944 ------AACUUGCAGAUAAUUGAAUCGAUUUUCGUUAUUCAAUUAUUACUUUGCCUCAAAU----AGGUUGCCCUAUUUUCGGUAAUCCAUAUCU ------........(((((((((((((.....))..)))))))))))...(((((..((((----(((....)))))))..)))))......... ( -20.10, z-score = -4.05, R) >droYak2.chrX 15994586 82 + 21770863 -------GUAUCAUUUUAAUACAAUUAAGUUUGAAGAAUCGG--AAGAAGAAGCCUUUAAU----AGGUUGCCCUACUUCUGAAAAUCCAUAUCA -------...(((.((((((...))))))..)))....((((--(((.((.(((((.....----)))))...)).)))))))............ ( -15.30, z-score = -1.54, R) >consensus _______AUUUAAUUAUAAUUGAAUCGAUUUUCGUUAUUCAAUUAUUACUAUGCCUUAAAU____AGGUUGCCCUAUUUUUGGUAAUCCAUAUCU .....................(((......))).................................(((((((........)))))))....... ( -4.91 = -5.13 + 0.22)
| Location | 17,366,867 – 17,366,962 |
|---|---|
| Length | 95 |
| Sequences | 3 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 64.00 |
| Shannon entropy | 0.48503 |
| G+C content | 0.29929 |
| Mean single sequence MFE | -19.40 |
| Consensus MFE | -5.58 |
| Energy contribution | -4.70 |
| Covariance contribution | -0.88 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.94 |
| Structure conservation index | 0.29 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.03 |
| SVM RNA-class probability | 0.878228 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17366867 95 - 22422827 AGAUAUGGAUUACCAAAAAUAGGGCAACCUAUGCAUUUAAGGCAUAGUAAUAAUUGAAUAACGAAAAUCGAUUCAUUUAUAAAUAAAUGAAUCAA .(((....(((((.....(((((....)))))((.......))...)))))..(((.....)))..)))((((((((((....)))))))))).. ( -20.60, z-score = -3.63, R) >droSec1.super_17 1212926 85 - 1527944 AGAUAUGGAUUACCGAAAAUAGGGCAACCU----AUUUGAGGCAAAGUAAUAAUUGAAUAACGAAAAUCGAUUCAAUUAUCUGCAAGUU------ ............((..(((((((....)))----))))..))....(((((((((((((..((.....)))))))))))).))).....------ ( -23.00, z-score = -4.38, R) >droYak2.chrX 15994586 82 - 21770863 UGAUAUGGAUUUUCAGAAGUAGGGCAACCU----AUUAAAGGCUUCUUCUU--CCGAUUCUUCAAACUUAAUUGUAUUAAAAUGAUAC------- (((((((((.....(((((((((....)))----.......))))))...)--))((....))..........)))))).........------- ( -14.61, z-score = -0.82, R) >consensus AGAUAUGGAUUACCAAAAAUAGGGCAACCU____AUUUAAGGCAUAGUAAUAAUUGAAUAACGAAAAUCGAUUCAAUUAUAAACAAAU_______ .....(((....))).....(((....)))................................(((......)))..................... ( -5.58 = -4.70 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:52:52 2011