| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,362,578 – 17,362,677 |
| Length | 99 |
| Max. P | 0.991172 |
| Location | 17,362,578 – 17,362,677 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 75.50 |
| Shannon entropy | 0.41720 |
| G+C content | 0.36483 |
| Mean single sequence MFE | -26.28 |
| Consensus MFE | -17.88 |
| Energy contribution | -18.68 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.38 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.46 |
| SVM RNA-class probability | 0.991172 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17362578 99 + 22422827 GGUCACACUGUGACUGUGGUGUGCCCAGCUAUUAAUAAGAAGCAAAUAAAUUGAGGUUUCUAGUAACCCUCCAAAUUAAUAUAUCAAUUUAUCUGCAUA----------------- ((.(((((..(....)..))))).))...............(((.(((((((((((((......))))...............))))))))).)))...----------------- ( -23.76, z-score = -2.16, R) >droEre2.scaffold_4690 7701744 111 + 18748788 GGUCACACUGCGAUUGUAGUGUGCCCAUCUAGUAAUAUGAGGCAAAUAAAUGAACGUUUCAAGUAACCCUUCAAAAUAUUACUUCAAUUUAUCUGUAAUGUAAGGAAACAU----- ((.((((((((....)))))))).)).....((.((.((((((............)))))).)).))((((....(((((((............)))))))))))......----- ( -24.70, z-score = -2.14, R) >droYak2.chrX 15990059 116 + 21770863 GGUCACACUGCGCAAGUGGUGUGCCCAGCUAAUCAUAAGAGGCAAAUAAAUUAGUUUUCUAAGUAACCCGUCAAAUUAAUAUUUCAAUUAAUCUGUUUUAUGCAAGGGCAACUCAU ((.(((((..(....)..))))).)).(((...((((((((((.......((((....)))).......)))..((((((......))))))...)))))))....)))....... ( -29.44, z-score = -2.94, R) >droSec1.super_17 1208484 99 + 1527944 GGUCCCACUGCCACUGUGGUGUGCCCAGCCAUUAAUAAGAUGCAAAUAAAUUGGGGUUUCUAGUAACCCUCGAAAUUAAUAUUUCAAUUUAUCUGCAUA----------------- ((.(.(((..(....)..))).).)).............(((((.(((((((((((((......)))))).(((((....)))))))))))).))))).----------------- ( -27.20, z-score = -2.52, R) >droSim1.chrX 3489003 99 - 17042790 GGUCACACUGCCACUGUGGUGUGCCCAGCCAUUAAUAAGAAGCAAAUAAAUUGGGGUUUCUAGUAACCAUUGAAAUUAAUAUUUCAAUUUAUCUGCAUA----------------- ((.(((((..(....)..))))).))...............(((.(((((((..((((......))))...(((((....)))))))))))).)))...----------------- ( -26.30, z-score = -2.15, R) >consensus GGUCACACUGCGACUGUGGUGUGCCCAGCUAUUAAUAAGAAGCAAAUAAAUUGGGGUUUCUAGUAACCCUUCAAAUUAAUAUUUCAAUUUAUCUGCAUA_________________ ((.((((((((....)))))))).))...............(((.(((((((((((((......))))...............))))))))).))).................... (-17.88 = -18.68 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:52:50 2011