| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,359,904 – 17,359,999 |
| Length | 95 |
| Max. P | 0.942604 |
| Location | 17,359,904 – 17,359,999 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 81.20 |
| Shannon entropy | 0.33145 |
| G+C content | 0.48747 |
| Mean single sequence MFE | -28.75 |
| Consensus MFE | -18.35 |
| Energy contribution | -19.93 |
| Covariance contribution | 1.59 |
| Combinations/Pair | 1.22 |
| Mean z-score | -2.34 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.48 |
| SVM RNA-class probability | 0.942604 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17359904 95 - 22422827 ------------CAUC-CCCAUUCCAACGCCAGU--CGUCCGCUGGAUGAUUAAUGGUCGUGAACAUGACAUCGAGUUUGUCUCGAAUCUGUUUUGUUUCUGUGGCCAUG ------------....-..............(((--(((((...)))))))).(((((((.(((((.(((((((((.....)))))...)))).)))))...))))))). ( -27.40, z-score = -1.88, R) >droAna3.scaffold_13248 1762040 105 + 4840945 UUCGGCCCAGUCCGUCGCUUCUGGCCAAGUCUGUCCCGUCCGAGCCAUGAUUAAUGUUCUUGAACAUGACAGAGAG-UUGUCUCAGAUC----UCGAAUCUCGAAUCGCU ...((((.(((.....)))...))))...((((((..((.((((.(((.....)))..)))).))..))))))(((-....))).(((.----(((.....))))))... ( -26.50, z-score = -0.14, R) >droEre2.scaffold_4690 7699095 95 - 18748788 ------------CAUC-CCCAUUCCUACGCCAGU--UGUCCACUGGAUGAUUAAUGGUCGUGAACAUGACAUCGAGUUUGUCUCGAAUCUGUUUUGUUUCUGCGACCAUG ------------....-..........(((((((--.....))))).))....(((((((((((((.(((((((((.....)))))...)))).)))))..)))))))). ( -30.00, z-score = -3.47, R) >droYak2.chrX 15987469 95 - 21770863 ------------CAUC-CCCAUUCCUACGCCAGU--CGUCCACUGGAUGAUUAAUGGUCGUGAACAUGACAUCGAGUUUGUCUCGAAUCUGUUUUGUUUCUGCGGCCAUG ------------....-..............(((--(((((...)))))))).(((((((((((((.(((((((((.....)))))...)))).)))))..)))))))). ( -31.20, z-score = -3.35, R) >droSec1.super_17 1205780 95 - 1527944 ------------CAUC-CCCAUUCCUACGCCAGU--CGUCCGCUGGAUGAUUAAUGGUCGUGAACAUGACAUCGAGUUUGUCUCGAAUCUGUUUUGUUUCUGCAGCCAUG ------------....-..............(((--(((((...)))))))).(((((.(((((((.(((((((((.....)))))...)))).)))))..)).))))). ( -26.20, z-score = -1.99, R) >droSim1.chrX_random 4440399 95 - 5698898 ------------CAUC-CCCAUUCCUACGCCAGU--CGUCCGCUGGAUGAUUAAUGGUCGUGAACAUGACAUCGAGUUUGUCUCGAAUCUGUUUUGUUUCUGCGGCCAUG ------------....-..............(((--(((((...)))))))).(((((((((((((.(((((((((.....)))))...)))).)))))..)))))))). ( -31.20, z-score = -3.19, R) >consensus ____________CAUC_CCCAUUCCUACGCCAGU__CGUCCGCUGGAUGAUUAAUGGUCGUGAACAUGACAUCGAGUUUGUCUCGAAUCUGUUUUGUUUCUGCGGCCAUG .............................(((((.......))))).......(((((((((((((.(((((((((.....)))))...)))).)))))..)))))))). (-18.35 = -19.93 + 1.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:52:49 2011