| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,347,897 – 17,348,017 |
| Length | 120 |
| Max. P | 0.658978 |
| Location | 17,347,897 – 17,348,017 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 90.97 |
| Shannon entropy | 0.14771 |
| G+C content | 0.46430 |
| Mean single sequence MFE | -34.27 |
| Consensus MFE | -30.55 |
| Energy contribution | -30.43 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.658978 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17347897 120 - 22422827 GCCCAAAGGACUGGUUUAUUUGCUUGUUGAUGCAUUCGAAGAAUGCCAUUUUGGGGAAAAGGAUGAACCAGGGAAGAGAAUAAACUAGUGACAUCCACAACGGAUGCGGCAAUCGGAUCG (((......(((((((((((..(((.((...((((((...))))))((((((.......)))))).....)).)))..)))))))))))(.(((((.....))))))))).......... ( -33.90, z-score = -1.64, R) >droSim1.chrX 3475298 120 + 17042790 GCCCAAAGGACUGGUUUAUUUGCUUGUUGAUGCAUUCGAAGAAUGCCAUUUUGGGGAAAAGGAUGAACCAGGGAAGAGAAUAAACCGGUGACAUCCACAACGGAUGCGGCAAUCGGAUCG (((......(((((((((((..(((.((...((((((...))))))((((((.......)))))).....)).)))..)))))))))))(.(((((.....))))))))).......... ( -35.50, z-score = -1.56, R) >droSec1.super_17 1193756 120 - 1527944 GCCCAAAGGACUGGUUUAUUUGCUUGUUGAUGCAUUCCAAGAAUGUCAUUUUGGGGAAAAGGAUGAAACAGGGAAGAGAAUAAACCGGUGACAUCCACAACGGAUGCGGCAAUCGGAUCG (((......((((((((((((((........)).((((.......(((((((.......))))))).....))))..))))))))))))(.(((((.....))))))))).......... ( -35.10, z-score = -1.61, R) >droYak2.chrX 15968788 116 - 21770863 GCCCAAAGCACUGGUUUAUUUGCUCAUUGAUGCAUUUAAAGAUGGCCAUUUUGGGG-AAAGGAUGAACCAGGCAAGAGAAUAAACCGGUGACAGUUGU---GGAUGCGGCAAUCGGAUCG .......((.(((((((((((.(((...((((((((....))))..))))...)))-...)))))))))))))...........(((((....(((((---....))))).))))).... ( -32.60, z-score = -0.85, R) >consensus GCCCAAAGGACUGGUUUAUUUGCUUGUUGAUGCAUUCGAAGAAUGCCAUUUUGGGGAAAAGGAUGAACCAGGGAAGAGAAUAAACCGGUGACAUCCACAACGGAUGCGGCAAUCGGAUCG (((......(((((((((((..(((.((...((((((...))))))((((((.......)))))).....)).)))..)))))))))))(.(((((.....))))))))).......... (-30.55 = -30.43 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:52:46 2011