| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,344,656 – 17,344,709 |
| Length | 53 |
| Max. P | 0.823646 |
| Location | 17,344,656 – 17,344,709 |
|---|---|
| Length | 53 |
| Sequences | 3 |
| Columns | 53 |
| Reading direction | forward |
| Mean pairwise identity | 86.79 |
| Shannon entropy | 0.18584 |
| G+C content | 0.44654 |
| Mean single sequence MFE | -9.13 |
| Consensus MFE | -7.45 |
| Energy contribution | -7.23 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.81 |
| SVM RNA-class probability | 0.823646 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17344656 53 + 22422827 AUUCUUCUCCAUCUCAUCCUCUUUAACCUGAUCAGUGGUCAGUGUUGUAUUCU .......................(((((((((.....))))).))))...... ( -8.00, z-score = -2.02, R) >droSec1.super_17 1190640 53 + 1527944 AUUCUCCUCCUUCUCAUCCUCUUCAAUCUGACCAGUGGUCAGUGUUGUAUUCA .......................((((((((((...)))))).))))...... ( -9.20, z-score = -2.58, R) >droEre2.scaffold_4690 7683664 53 + 18748788 AUUCUCCUCCUGCUCAUCCUCCUUAACCUGAGCGGUGGUCAGUGUUGCAUUCU (((..((.((.(((((............))))))).))..))).......... ( -10.20, z-score = -1.10, R) >consensus AUUCUCCUCCUUCUCAUCCUCUUUAACCUGACCAGUGGUCAGUGUUGUAUUCU .......................(((((((((.....))))).))))...... ( -7.45 = -7.23 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:52:45 2011