| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,333,255 – 17,333,346 |
| Length | 91 |
| Max. P | 0.618120 |
| Location | 17,333,255 – 17,333,346 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 93.76 |
| Shannon entropy | 0.11177 |
| G+C content | 0.41221 |
| Mean single sequence MFE | -19.21 |
| Consensus MFE | -15.98 |
| Energy contribution | -16.30 |
| Covariance contribution | 0.32 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.618120 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17333255 91 - 22422827 UUGGG-UUUUACCAUUUUCUCAAUUUCCCAGCUUCUAUUAUCGAGGCGCAAUUUAUUGUGCCUGUAACUUUUUCGUUCUGUAAACAGUGGCA .((((-....................))))(((.((.......((((((((....))))))))...........(((.....))))).))). ( -18.45, z-score = -1.40, R) >droSim1.chrX 3461425 91 + 17042790 UUGGG-UUUUCCCAUUUUCUCAAUUUCCCAGCUUCUAUUAUCGAGGCGCAAUUUAUUGCGCCUGUAACUUUUUCGUUCUGUAAACAGUGGCA .((((-....))))................(((.((.......((((((((....))))))))...........(((.....))))).))). ( -21.80, z-score = -2.61, R) >droSec1.super_17 1179494 91 - 1527944 UUGGG-UUUUCCCAUUUUCUCAAUUUCCCAGCUUCUAUUAUCGAGGCGCAAUUUAUUGCGCCUGUAACUUUUCCGUUCUGUAAACAGUGGCA .((((-....))))................(((.((.......((((((((....))))))))...........(((.....))))).))). ( -21.80, z-score = -2.51, R) >droYak2.chrX 15952770 92 - 21770863 UUGGGUUUUUCCCAUUUUCUCAAUUUCCCAGCUGCUAUUAUCGCGCCGCAAUUUAUUGCGCCAGUAACUUGUUCGUUCUGUAAACAGUGGCC .((((.....))))................((..((......((((...........))))(((.(((......)))))).....))..)). ( -19.00, z-score = -1.06, R) >droEre2.scaffold_4690 7672926 91 - 18748788 UUGUG-UUUUCGCAUUUUCUCAAUUUCCCAGCUCCUAUUAUCCAGCCGCAAUUUAUUGCGCCUGUAACUUUUUCGUUCUGUAAACAGUGGCA .((((-....))))................((..((......(((.(((((....))))).)))..........(((.....)))))..)). ( -15.00, z-score = -1.47, R) >consensus UUGGG_UUUUCCCAUUUUCUCAAUUUCCCAGCUUCUAUUAUCGAGGCGCAAUUUAUUGCGCCUGUAACUUUUUCGUUCUGUAAACAGUGGCA .((((.....))))................((..((.......((((((((....))))))))...........(((.....)))))..)). (-15.98 = -16.30 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:52:42 2011