| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,321,069 – 17,321,181 |
| Length | 112 |
| Max. P | 0.557849 |
| Location | 17,321,069 – 17,321,181 |
|---|---|
| Length | 112 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.15 |
| Shannon entropy | 0.36440 |
| G+C content | 0.41553 |
| Mean single sequence MFE | -30.98 |
| Consensus MFE | -15.80 |
| Energy contribution | -17.60 |
| Covariance contribution | 1.80 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.557849 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17321069 112 - 22422827 UUUGACAGUUCAUGAUAGAUUGAAUUGCAG-AAGCUGUUGAUAAAUUGGACAGCUGAUACAAGGCCAAAGUUUGCUCC-------UAUGGCGAAUUGGUUGCAAGAGGCGCUGAUACACA ((((.(((((((........))))))))))-)(((((((.(.....).)))))))......(((((....(((((..(-------((........)))..))))).))).))........ ( -29.90, z-score = -1.07, R) >droEre2.scaffold_4690 7661225 91 - 18748788 UUCGACAGCUCAUGAUAGAUUGAAUUGGAG-AAGCUGUUGAUGAAUUGGGCAGCUG--GCA-----GAAGUUUGCUUC-------UAUGGCGAAUUUGAUGUACAA-------------- .((..(((.(((........))).)))..)-)(((((((.(.....).))))))).--(((-----.(((((((((..-------...)))))))))..)))....-------------- ( -24.80, z-score = -1.38, R) >droYak2.chrX 15941057 118 - 21770863 UUUGACAGUUCAUGAUAGAUGGAAUUGAAGAAAGCUGUUGAUAAAUUGGACAGCUGAGGCAAGAGCAAAGUUGGCUUCCAUCAAACAUGUCAAAUUUGUUGCAA-AGGCGCUGAUACAA- .....((((.((((...((((((.(((.....(((((((.(.....).)))))))....))).(((.......)))))))))...))))...........((..-..))))))......- ( -28.00, z-score = -0.36, R) >droSec1.super_17 1167714 109 - 1527944 UUUGACAGUUC---AUAGAUUGAAUUGCAG-AAGCUGUUGAUAAAUUGGACAGCUGAUGCGAGACCAAAGUUUGCUCC-------UAUGGCGAAUUGGUUGCAAGAGGCGCAGAUACAAA ((((..(((((---(.....))))))(((.-.(((((((.(.....).)))))))..))).....))))((((((.((-------(...((((.....))))...))).))))))..... ( -35.20, z-score = -3.26, R) >droSim1.chrX 3449440 112 + 17042790 UUUGACAGUCCAUGAUAGAUUGAAUUGCAG-AAGCUGUUGAUAAAUUGGACAGCUGAUGCGAGACCAAAGUUAGCUCC-------UAUGGCGAAUUGGUUGCAAGAGGCGCUGAUACAAA ((((.(((((.......)))))..(((((.-.(((((((.(.....).)))))))..)))))...))))((((((.((-------(...((((.....))))...))).))))))..... ( -37.00, z-score = -3.78, R) >consensus UUUGACAGUUCAUGAUAGAUUGAAUUGCAG_AAGCUGUUGAUAAAUUGGACAGCUGAUGCAAGACCAAAGUUUGCUCC_______UAUGGCGAAUUGGUUGCAAGAGGCGCUGAUACAAA .....(((((((........))))))).....(((((((.(.....).)))))))...(((..((((..(((((((............)))))))))))))).................. (-15.80 = -17.60 + 1.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:52:35 2011