Locus 15078

Sequence ID dm3.chrX
Location 17,317,820 – 17,317,938
Length 118
Max. P 0.763417
window20776

overview

Window 6

Location 17,317,820 – 17,317,938
Length 118
Sequences 6
Columns 128
Reading direction reverse
Mean pairwise identity 66.88
Shannon entropy 0.63635
G+C content 0.44979
Mean single sequence MFE -33.20
Consensus MFE -15.69
Energy contribution -15.85
Covariance contribution 0.16
Combinations/Pair 1.42
Mean z-score -1.05
Structure conservation index 0.47
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.62
SVM RNA-class probability 0.763417
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 17317820 118 - 22422827
AUAGUGCAAUAGAGACUGAUAUAUGUGU----------CAGAGAAAGAGAUGGACUUACAGCAUCUACAGGUGUUCUUGUCUUGGCACUUUUCGCGUUGCACUGUCUCUUUCUCGCAUGCUACCUCCU
...((((....((.((........)).)----------).(((((((((((((((....((((((....))))))...))))..((((.......).)))...))))))))))))))).......... ( -34.00, z-score =  -0.98, R)
>anoGam1.chr3L 6777158 103 - 41284009
------UAAGCAAACUCGACUUGAAUAGCCGCUUCACCCGGAGAAGGUGGUGCACAAAUAGCACUAAUAAAUGCAAUU-UCUCGGCUGUUUUUU--UUACAUUUUACAGUUU----------------
------................((((((((((.(((((.......))))).)).......(((........)))....-....))))))))...--................---------------- ( -21.00, z-score =  -0.56, R)
>droSim1.chrX 3446182 118 + 17042790
AUAGUGCGAAAGAGACUGAUAUAUGUG----------GCAGAGAAAGAGAUGGACUUACAGCAUCUACAGGUGUUCUUGUCUUGGCACUUUUCCCGCUGCACUGUCUCUUUCUCGCAUGCUACCUCCU
...(((.(((((((((.(.....((..----------((.(..((((.(..((((....((((((....))))))...))))...).))))..).))..))).))))))))).)))............ ( -37.30, z-score =  -1.79, R)
>droSec1.super_17 1164440 118 - 1527944
AUAGUGCGAAAGAGACUGAUAUAUGUG----------GCAGAGAAAGAGAUGGACUUACAGCAUCUACAGGUGUUCUUGUCUUGGCACUUUUCCCGCUGCACUGUCUCUUUCUCGCAUGCUACCUCCU
...(((.(((((((((.(.....((..----------((.(..((((.(..((((....((((((....))))))...))))...).))))..).))..))).))))))))).)))............ ( -37.30, z-score =  -1.79, R)
>droYak2.chrX 15937746 128 - 21770863
GUAGUGCAAAAGAGAUUGAUAUAUAUGUAUGUUAUAGGGAGUGAAAGAGACGGACUUACCGCAUCUACAGGUGUUUUGAUCCCGGCACUUUUCCCGUUGCACUGUCUCUUUCUCGCAUGCAUUCUCCU
((((((..(((((((((((((((....)))))))..((((...((((.(.(((..(((..(((((....)))))..)))..))).).))))))))........))))))))..))).)))........ ( -33.10, z-score =  -0.68, R)
>droEre2.scaffold_4690 7658431 122 - 18748788
GAAGUCCAAAAGGGACGGAUAAAUGUG------AAAGGGAGCAAGAGAGAUGGACUUACUGCAUCUACAGGUGCUUAUGUCGUGGCACUUUUCCCGUUGCACUGUCUCUUUCUCGCACGCUUUGCGCC
...((((.....))))........(((------((((.(.((.(((((((..(((....((((.....(((((((........))))))).......))))..)))))))))).)).).)))).))). ( -36.50, z-score =  -0.50, R)
>consensus
AUAGUGCAAAAGAGACUGAUAUAUGUG__________GCAGAGAAAGAGAUGGACUUACAGCAUCUACAGGUGUUCUUGUCUUGGCACUUUUCCCGUUGCACUGUCUCUUUCUCGCAUGCUACCUCCU
...(((..((((((((.(.............................(((((.........)))))..(((((((........)))))))...........).))))))))..)))............ (-15.69 = -15.85 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:52:34 2011