| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,297,457 – 17,297,566 |
| Length | 109 |
| Max. P | 0.914700 |
| Location | 17,297,457 – 17,297,566 |
|---|---|
| Length | 109 |
| Sequences | 9 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 94.58 |
| Shannon entropy | 0.11549 |
| G+C content | 0.38023 |
| Mean single sequence MFE | -24.62 |
| Consensus MFE | -22.80 |
| Energy contribution | -23.02 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.24 |
| SVM RNA-class probability | 0.914700 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17297457 109 + 22422827 GCCAACCCCUAAUGAUAAUAAUUGCAUGCAAAAUGCAUUUAACCGCAAUUAGUGCAUUUAUUAGGCCAAAA-GUUGAUAUAUUGAAUAACUGCCACC-GUUGGCCACCAGU ((((((.((((((((...(((((((((((.....))))......)))))))......)))))))).....(-((((.(......).)))))......-))))))....... ( -25.20, z-score = -1.86, R) >droSim1.chrX 3424824 109 - 17042790 GCCAACCCCUAAUGAUAAUAAUUGCAUGCAAAAUGCAUUUAACCGCCAUUAGUGCAUUUAUUAGGCCAAAA-GUUGAUAUAUUGAAUAACUGCCACC-GUUGGCCACCAGU ((((((..((((((....(((.(((((.....))))).))).....))))))...........(((....(-((((.(......).))))))))...-))))))....... ( -23.70, z-score = -1.36, R) >droSec1.super_17 1144303 109 + 1527944 GCCAACCCCUAAUGAUAAUAAUUGCAUGCGAAAUGCAUUUAACCGCAAUUAGUGCAUUUAUUAGGCCAAAA-GUUGAUAUAUUGAAUAACUGCCACC-GUUGGCCACCAGU ((((((.........((((((.(((((...((.(((........))).)).))))).))))))(((....(-((((.(......).))))))))...-))))))....... ( -26.00, z-score = -2.13, R) >droYak2.chrX 15916635 109 + 21770863 GCCAACCCCUAAUGAUAAUAAUUGCAUGCAAAAUGCAUUUAACCGCAAUUAGUGCAUUUAUUAGGCCAAAA-GUUGAUAUAUUGAAUAACUGCCACC-GUUGGCCACCAAC ((((((.((((((((...(((((((((((.....))))......)))))))......)))))))).....(-((((.(......).)))))......-))))))....... ( -25.20, z-score = -2.24, R) >droEre2.scaffold_4690 7638829 109 + 18748788 GCCAACCCCUAAUGAUAAUAAUUGCAUGCAAAAUGCAUUUAACCGCAAUUAGUGCAUUUAUUAGGCCAAAA-GUUGAUAUAUUGAAUAACUGCCACC-GUUGGCCACCAGU ((((((.((((((((...(((((((((((.....))))......)))))))......)))))))).....(-((((.(......).)))))......-))))))....... ( -25.20, z-score = -1.86, R) >droAna3.scaffold_13248 1694278 110 - 4840945 GCCAACCCCUAAUGAUAAUAAUUGCAUGCAAAAUGCAUUUAACCGCAAUUAGUGCAUUUAUUAGGCCAAAA-GUUGAUAUAUUGAAUAACUGCCACCAGUUGGCCAAAAAC ((((((.((((((((...(((((((((((.....))))......)))))))......)))))))).....(-((((.(......).))))).......))))))....... ( -25.10, z-score = -2.20, R) >dp4.chrXL_group1e 1621150 107 + 12523060 GCCAACCCCUAAUGAUAAUAAUUGCAUGCAAAAUGCAUUUAACCGCAAUUAGUGCAUUUAUUAGGCCAAAAAGUUGAUAUAUUGAAUAACUGC---C-GCUGGCCACCAGU ...............((((((.(((((...((.(((........))).)).))))).))))))(((((...(((((.(......).)))))..---.-..)))))...... ( -21.60, z-score = -0.59, R) >droPer1.super_18 462003 107 + 1952607 GCCAACCCCUAAUGAUAAUAAUUGCAUGCAAAAUGCAUUUAACCGCAAUUAGUGCAUUUAUUAGGCCAAAAAGUUGAUAUAUUGAAUAACUGC---C-GUUGGCCACCAGU ((((((.((((((((...(((((((((((.....))))......)))))))......))))))))......(((((.(......).)))))..---.-))))))....... ( -25.20, z-score = -1.93, R) >droWil1.scaffold_180702 454094 101 + 4511350 GCCAACCCCUAAUGAUAAUAAUUGCAUGCAAAAUGCAUUUAACCGCAAUUAGUGCAUUUAUUAGGCCAAAAAGUUGAUGUAUUGAAUAACUGACA---GUUGGC------- ((((((.((((((((...(((((((((((.....))))......)))))))......))))))))......(((((.(......).)))))....---))))))------- ( -24.40, z-score = -2.02, R) >consensus GCCAACCCCUAAUGAUAAUAAUUGCAUGCAAAAUGCAUUUAACCGCAAUUAGUGCAUUUAUUAGGCCAAAA_GUUGAUAUAUUGAAUAACUGCCACC_GUUGGCCACCAGU ((((((.((((((((...(((.(((((.....))))).)))...(((.....)))..)))))))).(((....)))......................))))))....... (-22.80 = -23.02 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:52:31 2011