| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,274,347 – 17,274,437 |
| Length | 90 |
| Max. P | 0.991932 |
| Location | 17,274,347 – 17,274,437 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 76.79 |
| Shannon entropy | 0.40842 |
| G+C content | 0.47638 |
| Mean single sequence MFE | -29.82 |
| Consensus MFE | -16.29 |
| Energy contribution | -18.98 |
| Covariance contribution | 2.69 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.87 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.51 |
| SVM RNA-class probability | 0.991932 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17274347 90 + 22422827 ---GGCAACUAGCAACAUCAGCCAGCAACCUGCAACCUGCAACUUGCAACGCGGGUUGCUGCUAAUUGUUGCACAAAGUUUCACCAAACAAUC- ---((.((((.((((((..(((.((((((((((....(((.....)))..)))))))))))))...))))))....))))...))........- ( -33.20, z-score = -4.13, R) >droSec1.super_17 1121315 90 + 1527944 ---GGCAACUAGCAACAUCAGCCAGCAACCUGCAACCUGCAACUUGCAACCCGGGUUGCUGCUAAUUGUUGCACAAAGUUUCAAAGAUAUAUA- ---(....)..((((((..(((.(((((((((.....(((.....)))...))))))))))))...)))))).....................- ( -29.10, z-score = -2.81, R) >droSim1.chrX 3404527 90 - 17042790 ---GGCAACUAGCAACAUCAGCCAGCAACCUGCAACCUGCAACUUGCAACGCGGGUUGCUGCUAAUUGUUGCACAAAGUUUCACCAAACAAUC- ---((.((((.((((((..(((.((((((((((....(((.....)))..)))))))))))))...))))))....))))...))........- ( -33.20, z-score = -4.13, R) >droEre2.scaffold_4690 7616239 93 + 18748788 ACUAGGAACUGGCAACAUCAACCAGCAACCUGCAACCUGCAACUUGCAACGCGGGUUGCUGCUAAUUGUUGCACAAAGUUUCACCAAACAAUC- ....((((((.((((((.....(((((((((((....(((.....)))..))))))))))).....))))))....))))))...........- ( -37.30, z-score = -5.84, R) >droVir3.scaffold_12970 5702849 83 - 11907090 ---GCUGCUUAGCAAGUCGAAU--GCAAG-UGCAAC-UGCAACU-GCAGU-UGAGU--CUGCUAAUUGCUGCAACGAGUUUCACCAACAAUUGC ---((.(((((((((.((((.(--(((..-(((...-.)))..)-))).)-))).)--.))))))..)).))...................... ( -23.40, z-score = 0.04, R) >droMoj3.scaffold_6473 15401325 83 + 16943266 ---GCUGUUUAGCAAGUCGAAU--GCAAC-UGCAAC-UGCAACU-GCAAC-CGAGU--CUGCUAAUUGCUGCAACGAGUUUCACCAGCAAUUGC ---((((.(((((((.(((..(--(((..-(((...-.)))..)-)))..-))).)--.))))))..(((......))).....))))...... ( -22.70, z-score = -0.37, R) >consensus ___GGCAACUAGCAACAUCAACCAGCAACCUGCAACCUGCAACUUGCAACGCGGGUUGCUGCUAAUUGUUGCACAAAGUUUCACCAAAAAAUC_ ...........((((((.....((((((((((.....(((.....)))...)))))))))).....))))))...................... (-16.29 = -18.98 + 2.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:52:27 2011