| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,274,193 – 17,274,243 |
| Length | 50 |
| Max. P | 0.998620 |
| Location | 17,274,193 – 17,274,243 |
|---|---|
| Length | 50 |
| Sequences | 4 |
| Columns | 50 |
| Reading direction | forward |
| Mean pairwise identity | 98.00 |
| Shannon entropy | 0.03245 |
| G+C content | 0.46000 |
| Mean single sequence MFE | -22.20 |
| Consensus MFE | -22.08 |
| Energy contribution | -22.33 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -5.16 |
| Structure conservation index | 0.99 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.42 |
| SVM RNA-class probability | 0.998620 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17274193 50 + 22422827 ACCUGUGCGAAUAAGUGAGUGAUUGCGCUGGCACUCAUUCGCUUAUUCAU ........((((((((((((((.(((....))).)))))))))))))).. ( -23.30, z-score = -5.32, R) >droSec1.super_17 1121161 50 + 1527944 ACCUGUGCGAAUAAGUGAGUGAUUGCGCUGGCACUCAUUCGCUUAUUCAU ........((((((((((((((.(((....))).)))))))))))))).. ( -23.30, z-score = -5.32, R) >droSim1.chrX 3404373 50 - 17042790 ACCUGUGCGAAUAAGUGAGUGAUUGCGCUGGCACUCAUUCGCUUAUUCAU ........((((((((((((((.(((....))).)))))))))))))).. ( -23.30, z-score = -5.32, R) >droYak2.chrX 15891592 50 + 21770863 ACCUCUGCGAAUAAGUGAGUGAUUGCGCUGGCACUCAUUCCCUUAUUCAU ........(((((((.((((((.(((....))).)))))).))))))).. ( -18.90, z-score = -4.68, R) >consensus ACCUGUGCGAAUAAGUGAGUGAUUGCGCUGGCACUCAUUCGCUUAUUCAU ........((((((((((((((.(((....))).)))))))))))))).. (-22.08 = -22.33 + 0.25)
| Location | 17,274,193 – 17,274,243 |
|---|---|
| Length | 50 |
| Sequences | 4 |
| Columns | 50 |
| Reading direction | reverse |
| Mean pairwise identity | 98.00 |
| Shannon entropy | 0.03245 |
| G+C content | 0.46000 |
| Mean single sequence MFE | -14.90 |
| Consensus MFE | -14.90 |
| Energy contribution | -14.90 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.45 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.42 |
| SVM RNA-class probability | 0.990356 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17274193 50 - 22422827 AUGAAUAAGCGAAUGAGUGCCAGCGCAAUCACUCACUUAUUCGCACAGGU ..(((((((.((.(((.(((....))).))).)).)))))))........ ( -15.10, z-score = -2.56, R) >droSec1.super_17 1121161 50 - 1527944 AUGAAUAAGCGAAUGAGUGCCAGCGCAAUCACUCACUUAUUCGCACAGGU ..(((((((.((.(((.(((....))).))).)).)))))))........ ( -15.10, z-score = -2.56, R) >droSim1.chrX 3404373 50 + 17042790 AUGAAUAAGCGAAUGAGUGCCAGCGCAAUCACUCACUUAUUCGCACAGGU ..(((((((.((.(((.(((....))).))).)).)))))))........ ( -15.10, z-score = -2.56, R) >droYak2.chrX 15891592 50 - 21770863 AUGAAUAAGGGAAUGAGUGCCAGCGCAAUCACUCACUUAUUCGCAGAGGU ..(((((((.((.(((.(((....))).))).)).)))))))........ ( -14.30, z-score = -2.11, R) >consensus AUGAAUAAGCGAAUGAGUGCCAGCGCAAUCACUCACUUAUUCGCACAGGU ..(((((((.((.(((.(((....))).))).)).)))))))........ (-14.90 = -14.90 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:52:27 2011