Locus 15070

Sequence ID dm3.chrX
Location 17,264,981 – 17,265,087
Length 106
Max. P 0.968330
window20765 window20766

overview

Window 5

Location 17,264,981 – 17,265,087
Length 106
Sequences 7
Columns 106
Reading direction forward
Mean pairwise identity 70.69
Shannon entropy 0.59774
G+C content 0.45557
Mean single sequence MFE -30.83
Consensus MFE -15.82
Energy contribution -17.71
Covariance contribution 1.90
Combinations/Pair 1.31
Mean z-score -1.46
Structure conservation index 0.51
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.45
SVM RNA-class probability 0.939142
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 17264981 106 + 22422827
UCAAUCAAUGCGCCAAUUGAGCAAUAUCCAGCCAAGGGGUGAACGUAUCUAGAUUGCUGCCAAGUGGCUGCAAUCAAUGCCUCACAAUGGCGCAUAUGCUCGAUAU
.......((((((((..((((((.(((((.......)))))..........((((((.(((....))).))))))..)).))))...))))))))........... ( -36.50, z-score =  -2.29, R)
>droEre2.scaffold_4690 7606587 106 + 18748788
UCAAUCAAUGCGCCAAUUGAGCAAUAUCCAGCCAAGGGGUGAACGUAUCUAGAUUGCUGCCAAGUGGCUGCAAUCAAUGCCUCGCAAUGGCGCAUAUGUUCGCUAU
.........(((((..(((.((........)))))..)))(((((((((..((((((.(((....))).))))))...(((.......)))).))))))))))... ( -37.00, z-score =  -2.08, R)
>droYak2.chrX 15881795 106 + 21770863
UCAAUCAAUGCGCCAAUUGAGCAAUAUCCAGCCAAGGGGUGAACGCAUCUAGAUUGCUGCCAAGUGGCUGCAAUCAAUGCCGCUCAAUGGCGCAUAUGUUCGAUAU
.......((((((((.((((((..(((((.......)))))...((((...((((((.(((....))).)))))).)))).))))))))))))))........... ( -43.90, z-score =  -4.05, R)
>droSec1.super_17 1111638 106 + 1527944
UCAAUCAAUGCGCCAAUUGAGCAAUAUCCAGCCAAGGGGUGAACGUAUCUAGAUUGCUGCCAAGUGGCUGCAAUCAAUGCCUCACAAUAGCGCAUAUGCUCGAUAU
.......(((((((..(((.((........)))))..)((((..((((...((((((.(((....))).)))))).)))).))))....))))))........... ( -31.90, z-score =  -1.38, R)
>droSim1.chrX 3394475 106 - 17042790
UCAAUCAAUGCGCCAAUUGAGCAAUAUCCAGCCAAGGGGUGAACGUAUCUAGAUUGCUGCCAAGUGGCUGCAAUCAAUGCCUCACAAUGGCGCAUAUGCUCGAUAU
.......((((((((..((((((.(((((.......)))))..........((((((.(((....))).))))))..)).))))...))))))))........... ( -36.50, z-score =  -2.29, R)
>droAna3.scaffold_13248 1656646 94 - 4840945
UCAAUCAAUGCGGCAAUUGAGCAACACUC--CUAUCGCUCCAUGGGAUCUAAAGUGCCGG---------GCAAUCAGU-CGGCAAAUCCAUACAUAUGUUCCAUAU
.......(((..(((...((((.......--.....))))....((((......((((((---------........)-))))).)))).......)))..))).. ( -18.60, z-score =   0.30, R)
>droGri2.scaffold_14853 9099177 88 + 10151454
------------ACAAUCAGACGUUAGUC---CAGUGAAUGGUGGCUUGCAAAUAGGAAAUAUUUA---UCGAACGAUGCAUGGGAUCAAUCAAUCAAUUCAUUAA
------------.......(((....)))---...(((.((((..(.((((((((.....)))))(---((....)))))).)..)))).)))............. ( -11.40, z-score =   1.58, R)
>consensus
UCAAUCAAUGCGCCAAUUGAGCAAUAUCCAGCCAAGGGGUGAACGUAUCUAGAUUGCUGCCAAGUGGCUGCAAUCAAUGCCUCACAAUGGCGCAUAUGUUCGAUAU
...............((((((((.(((((.......)))))...((((...((((((.(((....))).)))))).))))................)))))))).. (-15.82 = -17.71 +   1.90)

alignment

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secondary structure

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dotplot

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Window 6

Location 17,264,981 – 17,265,087
Length 106
Sequences 7
Columns 106
Reading direction reverse
Mean pairwise identity 70.69
Shannon entropy 0.59774
G+C content 0.45557
Mean single sequence MFE -33.37
Consensus MFE -15.17
Energy contribution -16.94
Covariance contribution 1.78
Combinations/Pair 1.35
Mean z-score -1.92
Structure conservation index 0.45
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.80
SVM RNA-class probability 0.968330
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 17264981 106 - 22422827
AUAUCGAGCAUAUGCGCCAUUGUGAGGCAUUGAUUGCAGCCACUUGGCAGCAAUCUAGAUACGUUCACCCCUUGGCUGGAUAUUGCUCAAUUGGCGCAUUGAUUGA
...((((.((.((((((((...((((.((..((((((.(((....))).)))))).......(((((((....)).)))))..))))))..)))))))))).)))) ( -39.50, z-score =  -2.71, R)
>droEre2.scaffold_4690 7606587 106 - 18748788
AUAGCGAACAUAUGCGCCAUUGCGAGGCAUUGAUUGCAGCCACUUGGCAGCAAUCUAGAUACGUUCACCCCUUGGCUGGAUAUUGCUCAAUUGGCGCAUUGAUUGA
....(((.((.(((((((((((...((((..((((((.(((....))).)))))).......(((((((....)).)))))..))))))).)))))))))).))). ( -36.40, z-score =  -1.92, R)
>droYak2.chrX 15881795 106 - 21770863
AUAUCGAACAUAUGCGCCAUUGAGCGGCAUUGAUUGCAGCCACUUGGCAGCAAUCUAGAUGCGUUCACCCCUUGGCUGGAUAUUGCUCAAUUGGCGCAUUGAUUGA
...((((.((.((((((((((((((((((((((((((.(((....))).))))))..)))))(((((((....)).)))))..))))))).)))))))))).)))) ( -48.00, z-score =  -5.05, R)
>droSec1.super_17 1111638 106 - 1527944
AUAUCGAGCAUAUGCGCUAUUGUGAGGCAUUGAUUGCAGCCACUUGGCAGCAAUCUAGAUACGUUCACCCCUUGGCUGGAUAUUGCUCAAUUGGCGCAUUGAUUGA
...((((.((.((((((((...((((.((..((((((.(((....))).)))))).......(((((((....)).)))))..))))))..)))))))))).)))) ( -37.20, z-score =  -2.18, R)
>droSim1.chrX 3394475 106 + 17042790
AUAUCGAGCAUAUGCGCCAUUGUGAGGCAUUGAUUGCAGCCACUUGGCAGCAAUCUAGAUACGUUCACCCCUUGGCUGGAUAUUGCUCAAUUGGCGCAUUGAUUGA
...((((.((.((((((((...((((.((..((((((.(((....))).)))))).......(((((((....)).)))))..))))))..)))))))))).)))) ( -39.50, z-score =  -2.71, R)
>droAna3.scaffold_13248 1656646 94 + 4840945
AUAUGGAACAUAUGUAUGGAUUUGCCG-ACUGAUUGC---------CCGGCACUUUAGAUCCCAUGGAGCGAUAG--GAGUGUUGCUCAAUUGCCGCAUUGAUUGA
....((....((((...((((((((((-.........---------.))))).....)))))))))((((((((.--...)))))))).....))........... ( -21.90, z-score =   0.32, R)
>droGri2.scaffold_14853 9099177 88 - 10151454
UUAAUGAAUUGAUUGAUUGAUCCCAUGCAUCGUUCGA---UAAAUAUUUCCUAUUUGCAAGCCACCAUUCACUG---GACUAACGUCUGAUUGU------------
....(((((.((((((.((((.......)))).))))---)(((((.....)))))........).)))))..(---(((....))))......------------ ( -11.10, z-score =   0.83, R)
>consensus
AUAUCGAACAUAUGCGCCAUUGUGAGGCAUUGAUUGCAGCCACUUGGCAGCAAUCUAGAUACGUUCACCCCUUGGCUGGAUAUUGCUCAAUUGGCGCAUUGAUUGA
...........((((((((............((((((.(((....))).))))))..................(((........)))....))))))))....... (-15.17 = -16.94 +   1.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:52:25 2011