| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,257,096 – 17,257,186 |
| Length | 90 |
| Max. P | 0.540086 |
| Location | 17,257,096 – 17,257,186 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 74.53 |
| Shannon entropy | 0.43680 |
| G+C content | 0.34853 |
| Mean single sequence MFE | -23.10 |
| Consensus MFE | -6.10 |
| Energy contribution | -7.34 |
| Covariance contribution | 1.24 |
| Combinations/Pair | 1.31 |
| Mean z-score | -2.84 |
| Structure conservation index | 0.26 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.540086 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17257096 90 + 22422827 GGGACCAUUGUGUGGUUUUU---ACGCUACUAAAGACUAACUAAAAGGAAGGAAUACCUUAUUAUUAUUUGGUUAUUUUUUUUUGUAGCAAAU ((((((((...)))))))).---..(((((.(((((.((((((((((.((((....))))....)).)))))))).)))))...))))).... ( -22.00, z-score = -2.84, R) >droEre2.scaffold_4690 7599147 85 + 18748788 GGGACCAUUGUCUGGGCCUU---ACACUACUAAAGAUCA-CUAAAAGGAACGAAUAGAUUGUUGUUAUUUGGUAAGGUUCGCUACAAGC---- .((((....))))(((((((---((...........((.-.......)).(((((((.......)))))))))))))))).........---- ( -17.20, z-score = -0.15, R) >droYak2.chrX 15873604 87 + 21770863 GGGACCAUUGUGUGGUUUUUUUUACACUACUAAAGAUCG--UGGAUAGAAUGGAUAGAUUGCUAUUAACUGUUUAGUUUGGCAACAAAU---- .........((((((......))))))............--(((((((....(((((....)))))..)))))))(((((....)))))---- ( -16.00, z-score = -0.36, R) >droSec1.super_17 1103791 86 + 1527944 GGGACCAUUGUGUGGUUUUU---ACGCUACUAAAGAUCA-CUAAAAGGAAGGAUUACCUUCUUAUUAUUUGGGUAUUUUUG---GUAGCAAAU ((((((((...)))))))).---..((((((((((((..-((((((((((((....)))))))....)))))..)))))))---))))).... ( -30.00, z-score = -5.17, R) >droSim1.chrX 3387536 86 - 17042790 GGGACCAUUGUUUGGUUUUU---ACGCUACUAAAGAUCA-CUAAAAGGAAGGAUUACCUUCUUAUUAUUUGGGUAUUUUUG---GUAGCAAAU (((((((.....))))))).---..((((((((((((..-((((((((((((....)))))))....)))))..)))))))---))))).... ( -30.30, z-score = -5.66, R) >consensus GGGACCAUUGUGUGGUUUUU___ACGCUACUAAAGAUCA_CUAAAAGGAAGGAAUACCUUCUUAUUAUUUGGUUAUUUUUG___GUAGCAAAU (((((((.....)))))))......(((((..((((....(((((...(((((.....)))))....)))))....))))....))))).... ( -6.10 = -7.34 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:52:23 2011