Locus 15067

Sequence ID dm3.chrX
Location 17,252,478 – 17,252,591
Length 113
Max. P 0.895258
window20762

overview

Window 2

Location 17,252,478 – 17,252,591
Length 113
Sequences 6
Columns 113
Reading direction reverse
Mean pairwise identity 81.00
Shannon entropy 0.37293
G+C content 0.37807
Mean single sequence MFE -16.83
Consensus MFE -10.63
Energy contribution -10.64
Covariance contribution 0.00
Combinations/Pair 1.19
Mean z-score -1.97
Structure conservation index 0.63
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.12
SVM RNA-class probability 0.895258
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 17252478 113 - 22422827
AAUUCCAUCCAUUAAGUCGCAUUACGAUUUAAACCCAUUUGAACCCAACCAAAAGGCAUCCAACUAAUUUUCAAACGAAUAAAAACUUUUCAACGCACUUCAAGUGGCCACAU
...........((((((((.....))))))))..(((((((((.....((....))....................(((.........))).......)))))))))...... ( -16.00, z-score =  -2.47, R)
>droEre2.scaffold_4690 7594498 113 - 18748788
AAUACCAUCCAUUAAGUCGCAUUACGAUUUAAACCCAUUUGAACCCAGCCAAAAGGCAUCCAACUAAUUUCCAAACGAAUAAAAACUUUUCAACGCACUUCAAGUGGCCACAU
...........((((((((.....))))))))..(((((((((....(((....)))...................(((.........))).......)))))))))...... ( -20.40, z-score =  -4.09, R)
>droYak2.chrX 15868653 113 - 21770863
AAUUCCAUCCAUUAAGUCGCAUUACGAUUUAAACCCAUUUGAACCCAACCAAAAGGCAUCCAACUAAUUUUCGAGCGCAUAAAAACUUUUCAACGCACUUCAAGUGGCCACAU
...........((((((((.....))))))))..(((((((((.....((....))..................(((................)))..)))))))))...... ( -17.79, z-score =  -2.35, R)
>droSec1.super_17 1098191 113 - 1527944
AAUUCCAUCCAUUAAGUCACAUUACGAUUUAAACCCAUUUGAACCCAACCAAAAGGCAUACAACUAAUUUCCGAACGAAUAAAAACUUUUCAACGCACUUCAAGUGGCCACAU
...........(((((((.......)))))))..(((((((((.....((....))....................(((.........))).......)))))))))...... ( -13.70, z-score =  -1.66, R)
>droSim1.chrX 3382908 113 + 17042790
AAUUCCAUCCAUUAAGUCACAUUACGAUUUAAACCCAUUUGAACCCAACCAAAAGGCAUACAACUAAUUUCCGAACGAAUAAAAACUUUUCAACGCACUUCAAGUGGCCACAU
...........(((((((.......)))))))..(((((((((.....((....))....................(((.........))).......)))))))))...... ( -13.70, z-score =  -1.66, R)
>droPer1.super_18 405129 100 - 1952607
AAGUCUCUCCACAAGGUUCGUGUUUAAUCCAAACCCAUUGGAACCAUUGUAAAA------UCACGAAU-----AAUAUAGUGCCACUUUUCACCACAGUUUGGGUGGAUGG--
....((.(((((...((((((((((..(((((.....)))))((....)).)))------.)))))))-----...................(((.....)))))))).))-- ( -19.40, z-score =   0.41, R)
>consensus
AAUUCCAUCCAUUAAGUCGCAUUACGAUUUAAACCCAUUUGAACCCAACCAAAAGGCAUCCAACUAAUUUCCGAACGAAUAAAAACUUUUCAACGCACUUCAAGUGGCCACAU
...........(((((((.......)))))))..(((((((((.......(((((..............................)))))........)))))))))...... (-10.63 = -10.64 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:52:22 2011