Locus 15065

Sequence ID dm3.chrX
Location 17,240,515 – 17,240,625
Length 110
Max. P 0.913456
window20759 window20760

overview

Window 9

Location 17,240,515 – 17,240,625
Length 110
Sequences 5
Columns 110
Reading direction forward
Mean pairwise identity 95.09
Shannon entropy 0.08555
G+C content 0.45273
Mean single sequence MFE -32.84
Consensus MFE -31.38
Energy contribution -31.38
Covariance contribution 0.00
Combinations/Pair 1.06
Mean z-score -1.68
Structure conservation index 0.96
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.23
SVM RNA-class probability 0.913456
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 17240515 110 + 22422827
UGGCUUCGGUUUGGAAAGAGAAAUUUUCAGGGGUGAGGCAAUAGUGUUACAAAUAUUUCGUAUUCACACCGCGUUGGGAAUCCCACGCGUUGAAGCCAAAGUAUUGGACA
((((((((((.((((....(((((........((((.((....)).))))....)))))...)))).)))((((.(((...)))))))...)))))))............ ( -34.20, z-score =  -2.38, R)
>droEre2.scaffold_4690 7583917 110 + 18748788
UGGCUUCGGUUUGGAAAGAGAAAUUUUCGGGGGUGAGGCAAUAGUGUUACAAAUAUUUCGUAUUCACACCGUGUUGGGAAUCCCACGCAUUGAAGCCAAAGUAUUGGACA
((((((((((.((((....(((((........((((.((....)).))))....)))))...)))).)))((((.(((...)))))))...)))))))............ ( -32.30, z-score =  -1.79, R)
>droYak2.chrX 15857047 110 + 21770863
UGGCUUCGGUUUGGAAAGAGAAAUUUUCGGGGGUGAGGCAAUGGUGUUACAAAUAUUUCGUAUUCACACCGUGUUGGGAAUCCCACGCGUCGAAGCUCAAGUAUUGGACA
.((((((((..(((((((.....))))).(((((..((((.(((((((((.........)))...))))))))))....))))).))..))))))))............. ( -30.20, z-score =  -0.62, R)
>droSec1.super_17 1086600 110 + 1527944
UGGCUUCGGUUUGGAAAGAGAAAUUUUCGGGGGUGAGGCAACAGUGUUACAAAUAUUUCGUAUUCACACCGCGUUGGAAGUCCCACGCGUUGAAGCCAAAGUAUUGGACA
((((((((((.((((....(((((........((((.((....)).))))....)))))...)))).)))((((.((....)).))))...)))))))............ ( -33.70, z-score =  -1.80, R)
>droSim1.chrX 3371187 110 - 17042790
UGGCUUCGGUUUGGAAAGAGAAAUUUUCGGGGGUGAGGCAAUAGUGUUACAAAUAUUUCGUAUUCUCACCGCGUUGGAAGUCCCACGCGUUGAAGCCAAAGAAUUGGACA
(((((((((((((((((......))))))))(((((((....(((((.....)))))......)))))))((((.((....)).)))).)))))))))............ ( -33.80, z-score =  -1.81, R)
>consensus
UGGCUUCGGUUUGGAAAGAGAAAUUUUCGGGGGUGAGGCAAUAGUGUUACAAAUAUUUCGUAUUCACACCGCGUUGGGAAUCCCACGCGUUGAAGCCAAAGUAUUGGACA
((((((((((.((((....(((((........((((.((....)).))))....)))))...)))).)))((((.((.....))))))...)))))))............ (-31.38 = -31.38 +   0.00)

alignment

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secondary structure

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dotplot

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Window 0

Location 17,240,515 – 17,240,625
Length 110
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 95.09
Shannon entropy 0.08555
G+C content 0.45273
Mean single sequence MFE -26.29
Consensus MFE -23.17
Energy contribution -23.37
Covariance contribution 0.20
Combinations/Pair 1.07
Mean z-score -2.09
Structure conservation index 0.88
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.07
SVM RNA-class probability 0.885021
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 17240515 110 - 22422827
UGUCCAAUACUUUGGCUUCAACGCGUGGGAUUCCCAACGCGGUGUGAAUACGAAAUAUUUGUAACACUAUUGCCUCACCCCUGAAAAUUUCUCUUUCCAAACCGAAGCCA
............(((((((...(((((((...))).))))(((..(((...(((((....((((.....)))).(((....)))..)))))...)))...)))))))))) ( -27.80, z-score =  -2.65, R)
>droEre2.scaffold_4690 7583917 110 - 18748788
UGUCCAAUACUUUGGCUUCAAUGCGUGGGAUUCCCAACACGGUGUGAAUACGAAAUAUUUGUAACACUAUUGCCUCACCCCCGAAAAUUUCUCUUUCCAAACCGAAGCCA
............(((((((......((((...))))....(((..(((...(((((.((((....................)))).)))))...)))...)))))))))) ( -22.65, z-score =  -1.08, R)
>droYak2.chrX 15857047 110 - 21770863
UGUCCAAUACUUGAGCUUCGACGCGUGGGAUUCCCAACACGGUGUGAAUACGAAAUAUUUGUAACACCAUUGCCUCACCCCCGAAAAUUUCUCUUUCCAAACCGAAGCCA
...........((.(((((((.(((((((...))))....(((((...(((((.....))))))))))..))).))......((((.......))))......))))))) ( -23.20, z-score =  -1.26, R)
>droSec1.super_17 1086600 110 - 1527944
UGUCCAAUACUUUGGCUUCAACGCGUGGGACUUCCAACGCGGUGUGAAUACGAAAUAUUUGUAACACUGUUGCCUCACCCCCGAAAAUUUCUCUUUCCAAACCGAAGCCA
............(((((((...((((.((....)).))))(((..(((...(((((....(((((...))))).((......))..)))))...)))...)))))))))) ( -28.70, z-score =  -2.48, R)
>droSim1.chrX 3371187 110 + 17042790
UGUCCAAUUCUUUGGCUUCAACGCGUGGGACUUCCAACGCGGUGAGAAUACGAAAUAUUUGUAACACUAUUGCCUCACCCCCGAAAAUUUCUCUUUCCAAACCGAAGCCA
............(((((((...((((.((....)).))))((((((..(((((.....))))).((....)).))))))........................))))))) ( -29.10, z-score =  -2.96, R)
>consensus
UGUCCAAUACUUUGGCUUCAACGCGUGGGAUUCCCAACGCGGUGUGAAUACGAAAUAUUUGUAACACUAUUGCCUCACCCCCGAAAAUUUCUCUUUCCAAACCGAAGCCA
.............((((((...(((((((...))).))))(((..(((...(((((.((((....................)))).)))))...)))...))))))))). (-23.17 = -23.37 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:52:20 2011