Locus 15064

Sequence ID	dm3.chrX
Location	17,236,038 – 17,236,099
Length	61
Max. P	0.917632

overview

Window 8

Location	17,236,038 – 17,236,099
Length	61
Sequences	5
Columns	70
Reading direction	reverse
Mean pairwise identity	58.15
Shannon entropy	0.73948
G+C content	0.33902
Mean single sequence MFE	-12.32
Consensus MFE	-5.28
Energy contribution	-5.24
Covariance contribution	-0.04
Combinations/Pair	1.50
Mean z-score	-1.17
Structure conservation index	0.43
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	1.26
SVM RNA-class probability	0.917632
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chrX 17236038 61 - 22422827
AAAUAUGAAGUUAUAGGUAAGUUCUACCUAUGAACAUUCUGUGAUGGAUAAUAUCUUGUGA---------
......(((.(((((((((.....)))))))))...)))...((((.....))))......--------- ( -12.10, z-score =  -1.45, R)
>droYak2.chrX 15852444 56 - 21770863
---------GUUAUAGGUUAGUCCUACCAAUAAACUAUUUAUGAUAGAUAGUAACUUGUUCUGGA-----
---------....((((.....))))(((((((((((((((...))))))))...))))..))).----- (  -8.90, z-score =  -0.10, R)
>droSec1.super_17 1082193 70 - 1527944
AAAUGCGAAGUUAUAGGUUAGUUCCACCUAUGAACUUUCUAUGAUGGAUAGUAUCUUGUUUUUAUAGUGA
......((((((((((((.......))))))).)))))((((((.((((((....))))))))))))... ( -12.90, z-score =  -0.86, R)
>droSim1.chrX 3366733 70 + 17042790
AAAUGAGAAGUUAUAGGUUAGUUCUUCCUAUGAGCUUUCUAUGAUGGAUAGUAUCUUGUUUUUAUAGUGA
(((..(((.((((((((..(((((.......))))).))))))))........)))..)))......... ( -13.40, z-score =  -0.78, R)
>droPer1.super_18 385603 56 - 1952607
CAAUACGAAACUGUACUUAAAUUAUA-CAGCAGACUAGGGAGCGC-GACAGCCCCUGG------------
..........(((((.........))-)))....((((((.((..-....))))))))------------ ( -14.30, z-score =  -2.66, R)
>consensus
AAAUACGAAGUUAUAGGUUAGUUCUACCUAUGAACUUUCUAUGAUGGAUAGUAUCUUGUUUU________
..........((((((((.......))))))))..................................... ( -5.28 =  -5.24 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:52:18 2011