| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,234,137 – 17,234,229 |
| Length | 92 |
| Max. P | 0.853822 |
| Location | 17,234,137 – 17,234,229 |
|---|---|
| Length | 92 |
| Sequences | 9 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 81.67 |
| Shannon entropy | 0.36475 |
| G+C content | 0.30827 |
| Mean single sequence MFE | -11.54 |
| Consensus MFE | -8.14 |
| Energy contribution | -7.89 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.92 |
| SVM RNA-class probability | 0.853822 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17234137 92 + 22422827 UAUUCCGGCACCAUUAGUGCUAAAAGUGUUCGCAUUAAAAACAUUUUGCAUUUUUUCUCGCCUC---UUUUUC-ACUUUAUUUUUUCUUUUUUUUU ......(((......(((((..((((((((.........))))))))))))).......)))..---......-...................... ( -11.92, z-score = -2.22, R) >droAna3.scaffold_13248 1612668 90 - 4840945 UAUUCCGGCACCAUUAGUGUUAAAAGUGUUCGCAUUAAAAACAUUUUGCAUUUUUUUUCCCAUC---GUCUCUCUCUUUAUUUAUUUUUUUUU--- ......((.......(((((..((((((((.........))))))))))))).......))...---..........................--- ( -8.04, z-score = -1.26, R) >droEre2.scaffold_4690 7573703 90 + 18748788 UAUUCCGGCACCAUUAGUGCUAAAAGUGUUCGCAUUAAAAACAUUUUGCAUUUUUUCUCGCCUC---UUCUUCUACUGUAUUUAUUUUUCUUU--- ......(((......(((((..((((((((.........))))))))))))).......)))..---..........................--- ( -11.92, z-score = -1.98, R) >droYak2.chrX 15850342 89 + 21770863 UAUUCCGGCACCAUUAGUGCUAAAAGUGUUCGCAUUAAAAACAUUUUGCAUUUUUUCUCGCCUC---UUCUUC-ACUUUUAUUAUGUUUUUUU--- ......(((......(((((..((((((((.........))))))))))))).......)))..---......-...................--- ( -11.92, z-score = -1.81, R) >droSec1.super_17 1080313 87 + 1527944 UAUUCCGGCACCAUUAGUGCUAAAAGUGUUCGCAUUAAAAACAUUUUGCAUUUUUUCUCGCCUC---UUUUUC-ACUUUAUUUUUAUUUUU----- ......(((......(((((..((((((((.........))))))))))))).......)))..---......-.................----- ( -11.92, z-score = -1.95, R) >droSim1.chrX 3364833 87 - 17042790 UAUUCCGGCACCAUUAGUGCUAAAAGUGUUCGCAUUAAAAACAUUUUGCAUUUUUUCUCGCCUC---UUUUUC-ACUUUAUUUUUAUUUUU----- ......(((......(((((..((((((((.........))))))))))))).......)))..---......-.................----- ( -11.92, z-score = -1.95, R) >droVir3.scaffold_12970 5653557 80 - 11907090 UAUUCCGGCACCAUUAGUGUUAAAAGUGUUCACAUUAAAAACAUUUUGCAUUUUUUUCCUU------UUCUUUAGCGCCACUUUUU---------- ......(((......((((((...((((....))))...))))))..((............------.......))))).......---------- ( -9.51, z-score = -1.13, R) >droMoj3.scaffold_6473 15348635 94 + 16943266 UAUUCCGGCACCAUUAGUGUUAAAAGUGUUCACAUUAAAAACAUUUUGCAUUUUUUUCAUUCCUUCAUUCUUUAGCGACAUUUUUGCUGCUGUU-- .....(((((.((..((((((.((((((((.........))))))))((.........................))))))))..)).)))))..-- ( -16.01, z-score = -1.85, R) >droGri2.scaffold_14853 9057045 89 + 10151454 UAUUCCGGCACCAUUAGUGUUAAAAGUGUUCGCAUUAAAAACAUUUUGCAUUUUUUUUGUCC-UUCCUUCUUUAGCGCCACUUUUUUUUU------ ......(((((.....)))))(((((((..(((..............(((.......)))..-...........))).))))))).....------ ( -10.73, z-score = -0.91, R) >consensus UAUUCCGGCACCAUUAGUGCUAAAAGUGUUCGCAUUAAAAACAUUUUGCAUUUUUUCUCGCCUC___UUCUUC_ACUUUAUUUUUUUUUUU_U___ ......(((((.....))))).((((((((.........))))))))................................................. ( -8.14 = -7.89 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:52:18 2011