| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,216,809 – 17,216,923 |
| Length | 114 |
| Max. P | 0.936371 |
| Location | 17,216,809 – 17,216,923 |
|---|---|
| Length | 114 |
| Sequences | 10 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 67.15 |
| Shannon entropy | 0.71871 |
| G+C content | 0.66508 |
| Mean single sequence MFE | -54.42 |
| Consensus MFE | -19.81 |
| Energy contribution | -20.48 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.68 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.36 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.40 |
| SVM RNA-class probability | 0.936371 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17216809 114 - 22422827 ---ACGAGGCGGGAAGCGAAGGCUUUUGCAUGGCCGCUGCAGCGGCUGCCUGGCGGUAAUAGAUAUCGAUCGCGGAGGGCGUGGCCCCG---UGGGGCGAUUGGGCGGCAGCGGCGGCCG ---.....((((.((((....))))))))..(((((((((.((.(((((((.(((((....(....).)))))...))))((.((((..---..)))).))..))).)).))))))))). ( -60.20, z-score = -2.37, R) >droGri2.scaffold_14853 9035504 114 - 10151454 ---AGCUCGCUGGCAGCGCUGGCUUCUGCAACGCGGCGGCUGCGGCCGCUUGCCGAUAAUAAAUAUCAAUCGCCGAGGGAGGUGCACCG---UGUGGCGAUUGGGCAGCGGCGGCUGCCG ---........((((((((.((((.((((...)))).)))))).((((((.(((((((.....))))((((((((.((........)).---..)))))))).))))))))).)))))). ( -58.00, z-score = -1.38, R) >droVir3.scaffold_12970 5632971 114 + 11907090 ---AGGUGGCGGGAAGCGCUGGCUUCUGGAGUGCGGCGGCUGCUGCCGCUUGGCGAUAGUAUAUAUCAAUGGCCGAGGGCGGUGCACCG---UGCGGUGUCUGUGCUGCCGCAGCGGCUG ---.(((.((.((((((....))))))....(((((((((.((((((.((((((((((.....))))....))))))))))))(((((.---...)))))....))))))))))).))). ( -60.00, z-score = -2.14, R) >droWil1.scaffold_180702 337178 120 - 4511350 AGGCGGAGGCGGGCAGCGUUGGCUUUUGCAGGGCAGCUGCCGCUGCUGCCUGACGAUAAUAGAUAUCAAUUGCUGAGGGCGGGGCACCGCCAUGCGGUGAUUGUGUCGCAGCAGCGGCUG ..((((((((.(((...))).)))))))).........(((((((((((..(((((((.....))))(((..(((..(((((....)))))...)))..)))..)))))))))))))).. ( -61.00, z-score = -2.75, R) >droEre2.scaffold_4690 7556826 114 - 18748788 ---ACGAGGCCGGGAGUGAGGGCUUCUGCAUGGCUGCUGCUGCGGCCGCCUGGCGGUAAUAGAUGUCGAUCGCGGAGGGCGUGGCUCCG---UGUGGCGAUUGGGCGGCAGCGGCGGCCG ---..((((((.........)))))).....((((((((((((.((((((....))).......((((..(((((((.......)))))---))...))))..))).)))))))))))). ( -60.70, z-score = -2.03, R) >droYak2.chrX 15832558 114 - 21770863 ---ACGAGGCGGGGAGCGAGGGCUUUUGCAUGGCUGCUGCUGCGGCCGCCUGGCGGUAAUAGAUAUCGAUCGCGGAGGGCGUGGCGCCG---UGGGGCGAUUGGGCGGCAGCGGCGGCCG ---.....(((((.(((....))))))))..((((((((((((.(((((((.(((((....(....).)))))...))))....((((.---...))))....))).)))))))))))). ( -59.80, z-score = -2.39, R) >droSec1.super_17 1063116 114 - 1527944 ---AGGAAGUGGGGAGCGAGGGCUUUUGCAUGGCUGCUGCAGCGGCUGCCUGGCGGUAAUAGAUAUCGAUCGCGGAGGGCGUGGCCCCG---UGGGGCGAUUGGGCAGCAGCGGCGGCCG ---.....(((((((((....)))))).)))(((((((((....((((((..((((((.....)))))..((((.....))))((((..---..))))..)..)))))).))))))))). ( -53.70, z-score = -1.30, R) >droSim1.chrX 3347382 114 + 17042790 ---ACGAAGUGGGGAGCGAGGGCUUUUGCAUGGCUGCUGCAGCGGCUGCCUGGCGGUAAUAGAUAUCGAUCGCGGAGGGCGUGGCCCCG---UGGGGCGAUUGGGCAGCAGCGGCGGCCG ---.....(((((((((....)))))).)))(((((((((....((((((..((((((.....)))))..((((.....))))((((..---..))))..)..)))))).))))))))). ( -53.70, z-score = -1.16, R) >anoGam1.chrU 33401550 96 - 59568033 ------------AAGGUAAGGGUUUUUGGAGAGCAGCUGCUGCAGCUGCAUGUCUAUAGUAUGCGUCAACCGCACUUUGUGACGUUCCAGGAGGCCCUGAAGGAGUAG------------ ------------......((((((((((((..(((((((...)))))))(((((.((((..((((.....))))..))))))))))))).))))))))..........------------ ( -36.50, z-score = -2.18, R) >apiMel3.Group3 10145148 98 - 12341916 ------------AAGGUAGAGGCUUCUGCAACGUGACCGCGGCCGACGCUUGCUGGUAGAAGAGGCCGUUCGCGGGCAGCGCG---------UGC-GCGCUCGGGUAGGGCCAGUAUCGU ------------..((((..((((.((((...((((..((((((....(((........))).))))))))))((((.(((..---------..)-))))))..))))))))..)))).. ( -40.60, z-score = 0.58, R) >consensus ___ACGAGGCGGGAAGCGAGGGCUUUUGCAUGGCUGCUGCUGCGGCCGCCUGGCGGUAAUAGAUAUCGAUCGCGGAGGGCGUGGCACCG___UGCGGCGAUUGGGCAGCAGCGGCGGCCG ...........((((((....))))))........(((((.((.((.((((((.((((.....))))...(((.....)))...................)))))).)).)).))))).. (-19.81 = -20.48 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:52:15 2011