| Sequence ID | dm3.chr2L |
|---|---|
| Location | 11,679,241 – 11,679,359 |
| Length | 118 |
| Max. P | 0.990185 |
| Location | 11,679,241 – 11,679,359 |
|---|---|
| Length | 118 |
| Sequences | 4 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 94.07 |
| Shannon entropy | 0.09625 |
| G+C content | 0.36305 |
| Mean single sequence MFE | -34.22 |
| Consensus MFE | -28.01 |
| Energy contribution | -29.33 |
| Covariance contribution | 1.31 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.93 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.88 |
| SVM RNA-class probability | 0.972840 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 11679241 118 + 23011544 GGGUGAUCAGAAGGCGGUAAAUAAGUCAAUAAUGUGAAAUGUGUGCUAUUGCCACAUUUGCUGAUUGACUCACCGGAGGUGAUUGCAAAUAAUAUUUUUAUAUUUUGCACCCAUUAAU (((((..(((((.(((((.....(((((((...((.(((((((.((....)))))))))))..)))))))((((...)))))))))..((((.....)))).))))))))))...... ( -35.30, z-score = -2.98, R) >droSim1.chr2L 11488707 118 + 22036055 GGGUGAUCAGAAGGCGGUAAAUAAGUCAAUAAUGUGAAAUGUGUGCUAUUGCCACAUUUGCUGAUUGACUCACCGGAGGUGAUUGCAAAUAAUAUUUUUAUAUUUUGCACCCAUUAAU (((((..(((((.(((((.....(((((((...((.(((((((.((....)))))))))))..)))))))((((...)))))))))..((((.....)))).))))))))))...... ( -35.30, z-score = -2.98, R) >droSec1.super_3 7071174 118 + 7220098 GGGUGAUCAGAAGGCGGUAAAUAAGUCAAUACUGUGAAAUGUGUGCUUUUGCCACAUUUGCUGAUUGACUCACCAGAGGUGAUUGCAAAUAAUAUUUUUAUAUUUUGCACCCAUUAAU (((((..(((((.(((((.....(((((((...((.(((((((.((....)))))))))))..)))))))((((...)))))))))..((((.....)))).))))))))))...... ( -35.30, z-score = -3.06, R) >droYak2.chr2L 8102058 117 + 22324452 GGGUAAUCAGGAGGCGGUAAAUAAGUCAUUAACGAGAAAUAUGUGCUAUUGCCACAUUUGCUGAUUGACUCACCGCAGCUGAUUGCAAAUA-UAUAUUUAUAUUUUACACCCAUUAAU ((((((((((...(((((.....((((((((.(((.....((((((....).)))))))).))).))))).)))))..))))))))(((((-((....))))))).....))...... ( -31.00, z-score = -2.70, R) >consensus GGGUGAUCAGAAGGCGGUAAAUAAGUCAAUAAUGUGAAAUGUGUGCUAUUGCCACAUUUGCUGAUUGACUCACCGGAGGUGAUUGCAAAUAAUAUUUUUAUAUUUUGCACCCAUUAAU (((((((((.....((((.....(((((((...((.(((((((.((....)))))))))))..))))))).))))....)))))(((((..(((....)))..)))))))))...... (-28.01 = -29.33 + 1.31)
| Location | 11,679,241 – 11,679,359 |
|---|---|
| Length | 118 |
| Sequences | 4 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 94.07 |
| Shannon entropy | 0.09625 |
| G+C content | 0.36305 |
| Mean single sequence MFE | -29.52 |
| Consensus MFE | -26.66 |
| Energy contribution | -26.60 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.92 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.41 |
| SVM RNA-class probability | 0.990185 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 11679241 118 - 23011544 AUUAAUGGGUGCAAAAUAUAAAAAUAUUAUUUGCAAUCACCUCCGGUGAGUCAAUCAGCAAAUGUGGCAAUAGCACACAUUUCACAUUAUUGACUUAUUUACCGCCUUCUGAUCACCC ......(((((((((((((....))))..))))).((((....((((((((((((....(((((((((....)).)))))))......))))))))....)))).....)))).)))) ( -28.80, z-score = -3.03, R) >droSim1.chr2L 11488707 118 - 22036055 AUUAAUGGGUGCAAAAUAUAAAAAUAUUAUUUGCAAUCACCUCCGGUGAGUCAAUCAGCAAAUGUGGCAAUAGCACACAUUUCACAUUAUUGACUUAUUUACCGCCUUCUGAUCACCC ......(((((((((((((....))))..))))).((((....((((((((((((....(((((((((....)).)))))))......))))))))....)))).....)))).)))) ( -28.80, z-score = -3.03, R) >droSec1.super_3 7071174 118 - 7220098 AUUAAUGGGUGCAAAAUAUAAAAAUAUUAUUUGCAAUCACCUCUGGUGAGUCAAUCAGCAAAUGUGGCAAAAGCACACAUUUCACAGUAUUGACUUAUUUACCGCCUUCUGAUCACCC ......(((((((((((((....))))..))))).((((....(((((((((((((...(((((((((....)).)))))))....).))))))))....)))).....)))).)))) ( -27.20, z-score = -2.10, R) >droYak2.chr2L 8102058 117 - 22324452 AUUAAUGGGUGUAAAAUAUAAAUAUA-UAUUUGCAAUCAGCUGCGGUGAGUCAAUCAGCAAAUGUGGCAAUAGCACAUAUUUCUCGUUAAUGACUUAUUUACCGCCUCCUGAUUACCC ......(((((((((.((((....))-)))))))((((((..(((((((((((((.((.(((((((((....)).))))))))).))...))))))....)))))...)))))))))) ( -33.30, z-score = -3.52, R) >consensus AUUAAUGGGUGCAAAAUAUAAAAAUAUUAUUUGCAAUCACCUCCGGUGAGUCAAUCAGCAAAUGUGGCAAUAGCACACAUUUCACAUUAUUGACUUAUUUACCGCCUUCUGAUCACCC ......(((((((((((((....))))..))))).((((....((((((((((((....(((((((((....)).)))))))......))))))))....)))).....)))).)))) (-26.66 = -26.60 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:33:15 2011