| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,207,203 – 17,207,309 |
| Length | 106 |
| Max. P | 0.695103 |
| Location | 17,207,203 – 17,207,309 |
|---|---|
| Length | 106 |
| Sequences | 4 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 83.23 |
| Shannon entropy | 0.28096 |
| G+C content | 0.62493 |
| Mean single sequence MFE | -40.67 |
| Consensus MFE | -32.71 |
| Energy contribution | -35.27 |
| Covariance contribution | 2.56 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.695103 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17207203 106 + 22422827 UCGAGUAGCUCCUGCCCACCGGAGCACGCUUGUUAGUCCACAGGAAUGAGGUGGUAGGAACCCCCAGUGGUAUACAGCCCCCUCUUGGAUAGCCACCCCCCCCCUG .(((((.(((((........)))))..)))))........((((...(.((((((.((.....))...(((.....))).((....))...)))))).)...)))) ( -30.30, z-score = -0.02, R) >droEre2.scaffold_4690 7547506 94 + 18748788 UCGAGUAGCUCCUGCCCACCGGAGCACGCCUGUUAGUCC-GGGGGUUGAGGGGGUAGGAG------GUAGGAGGC--CCCCCUCGUGGAUACCCGCCCCUCUG--- ..(((((.(((((((((.((..(((.(.((((......)-)))))))..)))))))))))------.)).((((.--...))))((((....))))..)))..--- ( -40.40, z-score = 0.41, R) >droSec1.super_17 1053703 105 + 1527944 UCGAGUAGCUCCUGCCCACCGGAGCACGCUUGUUAGUCCAGGGGAAUGAGGGGGUAGGAACCCUCAGUGGUAUACUGCCCCCUCUUGGAAAACCACCCCCCCCUG- .(((((.(((((........)))))..)))))......((((((...((((((((((..(((......)))...)))))))))).(((....)))....))))))- ( -47.80, z-score = -3.21, R) >droSim1.chrX 3337719 104 - 17042790 UCGAGUAGCUCCUGCCCACCGGAGCACGCUUGUUAGUCCAGGGGAAUGAGGGGGUAUGAACCCUCAGUGGUAUACUGCCCCCUCUUGGAUAACCACCCCCCCUG-- .(((((.(((((........)))))..)))))......((((((...(((((((((((.(((......))).)).))))))))).(((....)))...))))))-- ( -44.20, z-score = -2.88, R) >consensus UCGAGUAGCUCCUGCCCACCGGAGCACGCUUGUUAGUCCAGGGGAAUGAGGGGGUAGGAACCCUCAGUGGUAUACUGCCCCCUCUUGGAUAACCACCCCCCCC___ .(((((.(((((........)))))..)))))........((((...((((((((((..(((......)))...)))))))))).(((....)))))))....... (-32.71 = -35.27 + 2.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:52:12 2011