| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,194,317 – 17,194,430 |
| Length | 113 |
| Max. P | 0.764898 |
| Location | 17,194,317 – 17,194,430 |
|---|---|
| Length | 113 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 85.71 |
| Shannon entropy | 0.25298 |
| G+C content | 0.36695 |
| Mean single sequence MFE | -21.96 |
| Consensus MFE | -16.40 |
| Energy contribution | -17.24 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.764898 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17194317 113 - 22422827 ------CCGACAUCCACAGUAGACACAUUACUUUGUCUUGUCACCGCCUCGAUAAAGUAUGCAAAUAUUUCUUAUCGUGCAUCGAGAAUUUCCUUCGAAUGUUUACAGAAGAAAACACU ------..((((..((.(((((.....))))).))...))))...((..(((((((((((....)))))..)))))).)).(((((.......))))).(((((........))))).. ( -20.20, z-score = -1.09, R) >droEre2.scaffold_4690 7534887 119 - 18748788 CCAUCCAUAAAUUUCACUGUAGGCACUUUACUUUGGCUUGUUACCGCCUUGAUAAAGUAUGCAAAUAUUUCUUAUCGUGCAGCGAGAAUUUCCCCUAAAUAUUUACAGGAGAAAACACU ...........((((.((((((((((........(((........)))..((((((((((....)))))..)))))))))....((........))......))))))))))....... ( -21.00, z-score = -0.66, R) >droYak2.chrX 15809469 119 - 21770863 CCAUCACUUGAUUCUACUGUAGACACUUUACUUUGGCUCUUUACCGCCCUGAUAAAGUAUGCAAAUAUUUCUUAUCGUGCAGCGAGAAUUUCCCCCAAAUAUUUACAGAAAAAAAAACA ................(((((((.((((((.(..(((........)))..).)))))).((((.(((.....)))..))))....................)))))))........... ( -17.40, z-score = -1.20, R) >droSec1.super_17 1040860 119 - 1527944 GCAUCACUAAAUUCCACUGUAGACACAUUACUUUGUCCUGUCACCGCCUUGAUAAAGUAUGCAAAUAUUUCUUAUCGUGCAUCGAGAAUUUCCCUUGAAUGUUUACAGAAGAAAACAAA ...........(((..(((((((((...(((((((((..((....))...)))))))))((((.(((.....)))..))))(((((.......))))).)))))))))..)))...... ( -25.20, z-score = -2.98, R) >droSim1.chrX 3325595 119 + 17042790 CAAUCACUAAAUUCCACUGUAGACACAUUACUUUGUCUUGUCACCGCCUUGAUAAAGUAUGCAAAUAUUUCUUAUCGUGCAUCGAGAAUUUCCCUUGAAUGUUUACAGAAGAAAACACU ...........(((..(((((((((...(((((((((..(.......)..)))))))))((((.(((.....)))..))))(((((.......))))).)))))))))..)))...... ( -26.00, z-score = -3.20, R) >consensus CCAUCACUAAAUUCCACUGUAGACACAUUACUUUGUCUUGUCACCGCCUUGAUAAAGUAUGCAAAUAUUUCUUAUCGUGCAUCGAGAAUUUCCCUUGAAUGUUUACAGAAGAAAACACU ................(((((((((...(((((((((.............)))))))))((((.(((.....)))..))))..................)))))))))........... (-16.40 = -17.24 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:52:09 2011