| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,188,318 – 17,188,421 |
| Length | 103 |
| Max. P | 0.744388 |
| Location | 17,188,318 – 17,188,421 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 68.23 |
| Shannon entropy | 0.59493 |
| G+C content | 0.38725 |
| Mean single sequence MFE | -17.35 |
| Consensus MFE | -9.11 |
| Energy contribution | -10.03 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.27 |
| Mean z-score | -0.94 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.744388 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17188318 103 + 22422827 ACAAUAAAAAGCAUA--CACAAAUAAACAGCAACAAUACAACGCGCGCUGAUUAAACGUGAGUCAACAACGUUCAGCAUUCGAAACAUGUUAAUCAGCAUUGUUU (((((..........--............((...........))..(((((((((.((((..((.................))..)))))))))))))))))).. ( -17.43, z-score = -0.77, R) >droSim1.chrX 13719569 102 + 17042790 ACAAUAAAAAGCAUACACACAAAUAAACAGCAACAAUACAACGCGCGCUGAUUAAACGUGAGUCAAC---GUUCAGCAUUCGAAACAUGUUAAUCAGCAUUGUUU (((((........................((...........))..(((((((((.((((..((((.---(.....).)).))..)))))))))))))))))).. ( -17.70, z-score = -0.84, R) >droSec1.super_17 1034883 102 + 1527944 ACAAUAAAAAGCAUAUACACAAAUAAACAGCAACAAUACAACGCGCGCUGAUUAAACGUGAGUCAAC---GUUCAGCAUUCGAAACAUGUUAAUCAGCAUUGUUC (((((.....((.(((......)))....((...........))))(((((((((.((((..((((.---(.....).)).))..)))))))))))))))))).. ( -18.50, z-score = -1.26, R) >droEre2.scaffold_4690 7528787 100 + 18748788 ACAAUAAAAAGCAUA--CACAAAUAAACAGCAAUAAUACAACGUGCGCUGAUUAAACGUGAGUCAAC---GCUCAGCAUUCGAAACAUGUUAAUCAGCAUUGUUU (((((.....((((.--.........................))))(((((((((.((((..((((.---((...)).)).))..)))))))))))))))))).. ( -20.17, z-score = -1.61, R) >dp4.chrXL_group1e 1485909 85 + 12523060 ----------------ACAGCACACACCAUACACCAUACAACACG-ACUGAUUGAACGUGAGUCAAC---AACAUGGGCCCGAAACAUGUUAAUCAACAUUGAAC ----------------......................(((...(-(((.((.....)).))))...---((((((.........))))))........)))... ( -10.20, z-score = 0.71, R) >droMoj3.scaffold_6308 2101622 86 - 3356042 -------------GACGUUGAUUGAAUCGACAACAUCAGCAUCGGCAUCGGC--ACCGCUGACUAACU-CGAACAGCAUUGAAAACAUGUUAAUCAACACUG--- -------------...(((((((...((((.....(((((....((....))--...))))).....)-)))..((((((....).))))))))))))....--- ( -20.10, z-score = -1.88, R) >consensus ACAAUAAAAAGCAUA_ACACAAAUAAACAGCAACAAUACAACGCGCGCUGAUUAAACGUGAGUCAAC___GUUCAGCAUUCGAAACAUGUUAAUCAGCAUUGUUU ..............................................(((((((((.((((..((.................))..)))))))))))))....... ( -9.11 = -10.03 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:52:08 2011