| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,174,279 – 17,174,339 |
| Length | 60 |
| Max. P | 0.990686 |
| Location | 17,174,279 – 17,174,339 |
|---|---|
| Length | 60 |
| Sequences | 4 |
| Columns | 68 |
| Reading direction | forward |
| Mean pairwise identity | 58.59 |
| Shannon entropy | 0.64829 |
| G+C content | 0.63640 |
| Mean single sequence MFE | -22.88 |
| Consensus MFE | -16.35 |
| Energy contribution | -16.10 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.74 |
| Mean z-score | -1.19 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.43 |
| SVM RNA-class probability | 0.990686 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17174279 60 + 22422827 UGGCGUUGGUAACGCUAAUUCUGGCGUCAUUGGAGGUCAGGAGCUCAUCGACCCAUCGGA-------- (((.((((((...(((...((((((.((....)).)))))))))..))))))))).....-------- ( -20.00, z-score = -1.22, R) >droGri2.scaffold_15203 5572863 66 - 11997470 CGGCGAUAGUGA-GCCACCGCUGUCGCCACCG-CCACCACCACCCCAGCAGCAGGAUGCUCAAGACAA .((((((((((.-.....))))))))))....-.............((((......))))........ ( -21.20, z-score = -2.30, R) >droEre2.scaffold_4690 7513256 60 + 18748788 UGGCGUCGGAAACGCUAGCUCUGGCGCCGGCGGAGGUCAGGAGCUCCUCGAACCGCCGGA-------- .(((((((((.........)))))))))(((((...(((((....))).)).)))))...-------- ( -29.50, z-score = -1.38, R) >droYak2.chrX 15782083 59 + 21770863 -GUCGUUGGUAAUGCUAACUCUGGCGGCGGCGGUGGCCAGGAGCUCGUCGAGCCAUCGGA-------- -(((((..(...........)..)))))..(((((((..((......))..)))))))..-------- ( -20.80, z-score = 0.12, R) >consensus UGGCGUUGGUAACGCUAACUCUGGCGCCAGCGGAGGCCAGGAGCUCAUCGACCCAUCGGA________ .((((((((((.......))))))))))..(((((((..((......))..))))))).......... (-16.35 = -16.10 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:52:05 2011