| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,161,568 – 17,161,672 |
| Length | 104 |
| Max. P | 0.549670 |
| Location | 17,161,568 – 17,161,672 |
|---|---|
| Length | 104 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 66.55 |
| Shannon entropy | 0.58181 |
| G+C content | 0.45150 |
| Mean single sequence MFE | -27.65 |
| Consensus MFE | -12.27 |
| Energy contribution | -13.23 |
| Covariance contribution | 0.96 |
| Combinations/Pair | 1.46 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.549670 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17161568 104 - 22422827 --GCCAAUUUGGCUAGCGCCAAAAUUAUAGACCA-GCAAAACGCCAUGA----AUUUGGUCAGGCCUUUCCAACUCUCAAUUGCCUAACAGGCAGCUGAGCAGAGUUAGGA----- --(((..((((((....))))))......(((((-((.....)).....----...))))).)))...(((((((((((.(((((.....))))).)))...))))).)))----- ( -33.70, z-score = -2.44, R) >droYak2.chrX 15768484 99 - 21770863 --GCCAAUUUGGCCAGCGCCAAAAUUACAGGCCA-GCAAAACGCCACCACA-CACUUGGUCAGCCGUUUCCCACUCCCAAUUGCCUAACAG--------GCGGAGUCAGGA----- --.....((((((....))))))......(((..-((.....)).((((..-....))))..)))...(((.(((((.....(((.....)--------)))))))..)))----- ( -25.30, z-score = -0.38, R) >droSec1.super_17 1004923 104 - 1527944 --GCCAAUUUGGCUAGCGCCAAAAUUACAGGCCA-GCAAAACGCCAUGA----AUUUGGUCAGGCUUUUCCAACUCUCAAUUGCCUAACAGGCCGCUGAGCAGAGUUAGGA----- --(((..((((((....))))))......(((((-((.....)).....----...))))).)))...(((((((((((...(((.....)))...)))...))))).)))----- ( -29.80, z-score = -0.52, R) >droSim1.chrX 13340892 104 - 17042790 --GCCAAUUUGGCUAGCGCCAAAAUUACAGGCCA-GCAAAACGCCAUGA----AUUUGGUCAGGCUUUUCCAACUCUCAAUUGCCUAACAGGCCGCUGAGCAGAGUUAGGA----- --(((..((((((....))))))......(((((-((.....)).....----...))))).)))...(((((((((((...(((.....)))...)))...))))).)))----- ( -29.80, z-score = -0.52, R) >droWil1.scaffold_181096 7613798 116 - 12416693 AUAGAAUUAAAAAUAUCGUAAGAAUUGAUCCCUGUGCAAAACGAAAUGAAAUCGUUUUGUAAAUUUGAAUUAAACUAAAUAAAUUUCAAUGGCUAAAAUGCUUUAACAGGUAACUA .(((...........((....)).......((((((((((((((.......)))))))))....(((((...............))))).(((......)))...)))))...))) ( -19.66, z-score = -2.15, R) >consensus __GCCAAUUUGGCUAGCGCCAAAAUUACAGGCCA_GCAAAACGCCAUGA____AUUUGGUCAGGCUUUUCCAACUCUCAAUUGCCUAACAGGCCGCUGAGCAGAGUUAGGA_____ ..(((..((((((....))))))......(((((......................))))).)))...(((((((((.....(((.....)))........)))))).)))..... (-12.27 = -13.23 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:52:04 2011