| Sequence ID | dm3.chr2L |
|---|---|
| Location | 11,662,893 – 11,663,006 |
| Length | 113 |
| Max. P | 0.778268 |
| Location | 11,662,893 – 11,663,006 |
|---|---|
| Length | 113 |
| Sequences | 5 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 85.28 |
| Shannon entropy | 0.26891 |
| G+C content | 0.49666 |
| Mean single sequence MFE | -34.10 |
| Consensus MFE | -24.94 |
| Energy contribution | -27.10 |
| Covariance contribution | 2.16 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.778268 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 11662893 113 + 23011544 GUGGGCACCACUUGGCAAAACGUGGGGCACCACCAGAAAGUUAGCCAAGUCAUCGACAUGUGGAUGAGCCAUGGCAAUAGUCAAAUGGCCAUUUCGCUAGCUCUCUAAUUGCC ((((...))))..(((((...((((....)))).(((.(((((((....(((((.(....).)))))((((((((....))))..))))......))))))).)))..))))) ( -39.50, z-score = -2.02, R) >droEre2.scaffold_4929 12892278 91 - 26641161 ---------------------GUGGG-CACCACUAUCAACUUAGCCAAGUCAUCGACAUGUGAAUGAGCCAUGACAAUAGUCAAACGGCCACUUCGCUUGCUCUCUAAUUGCC ---------------------(.(((-((...................(((...)))..(((((((.(((.((((....))))...))))).))))).))))).)........ ( -20.20, z-score = -0.50, R) >droYak2.chr2L 8085862 111 + 22324452 GUGGGCACUACUGGGUGAAAUGUGG--CAUCACCACAAACUUGGCCAAGUCAUCGACAUGUGGAUGAGCCAUGACAAUAGUCAAAUGGCCAGUUCGCUUGCUCUCUAAUUGCC (.(((((......((((((.(((((--.....)))))...(((((((..(((((.(....).)))))....((((....))))..)))))))))))))))))).)........ ( -35.80, z-score = -1.24, R) >droSec1.super_3 7055020 111 + 7220098 GUGGGCACCACUAGGCAAAACGUGG--CACCACCAGAAAGUUAGCCAAGUCAUCGACAUGUGGAUGAGCCAUGACAAUAGUCAAAUGGCCAUUUCGCUAGCUCUCUAAUUGCC ((((...))))..(((((...(((.--...))).(((.(((((((....(((((.(....).)))))((((((((....))))..))))......))))))).)))..))))) ( -37.50, z-score = -2.78, R) >droSim1.chr2L 11472488 111 + 22036055 GUGGGCACCACUAGGCAAAACGUGG--CACCACCAGAAAGUUAGCCAAGUCAUCGACAUGUGGAUGAGCCAUGACAAUAGUCAAAUGGCCAUUUCGCUAGCUCUCUAAUUGCC ((((...))))..(((((...(((.--...))).(((.(((((((....(((((.(....).)))))((((((((....))))..))))......))))))).)))..))))) ( -37.50, z-score = -2.78, R) >consensus GUGGGCACCACUAGGCAAAACGUGG__CACCACCAGAAAGUUAGCCAAGUCAUCGACAUGUGGAUGAGCCAUGACAAUAGUCAAAUGGCCAUUUCGCUAGCUCUCUAAUUGCC ((((...))))..(((((...((((....)))).(((.(((((((....(((((.(....).)))))((((((((....))))..))))......))))))).)))..))))) (-24.94 = -27.10 + 2.16)
| Location | 11,662,893 – 11,663,006 |
|---|---|
| Length | 113 |
| Sequences | 5 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 85.28 |
| Shannon entropy | 0.26891 |
| G+C content | 0.49666 |
| Mean single sequence MFE | -35.58 |
| Consensus MFE | -25.10 |
| Energy contribution | -27.42 |
| Covariance contribution | 2.32 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.537600 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 11662893 113 - 23011544 GGCAAUUAGAGAGCUAGCGAAAUGGCCAUUUGACUAUUGCCAUGGCUCAUCCACAUGUCGAUGACUUGGCUAACUUUCUGGUGGUGCCCCACGUUUUGCCAAGUGGUGCCCAC (((((.(((((((.(((((..(((((.((......)).)))))..)(((((........)))))....)))).)))))))((((....))))...)))))..((((...)))) ( -37.20, z-score = -1.37, R) >droEre2.scaffold_4929 12892278 91 + 26641161 GGCAAUUAGAGAGCAAGCGAAGUGGCCGUUUGACUAUUGUCAUGGCUCAUUCACAUGUCGAUGACUUGGCUAAGUUGAUAGUGGUG-CCCAC--------------------- ((((......(((((((((.......)))))(((....)))...))))..((((.(((((((...........)))))))))))))-))...--------------------- ( -25.10, z-score = -0.27, R) >droYak2.chr2L 8085862 111 - 22324452 GGCAAUUAGAGAGCAAGCGAACUGGCCAUUUGACUAUUGUCAUGGCUCAUCCACAUGUCGAUGACUUGGCCAAGUUUGUGGUGAUG--CCACAUUUCACCCAGUAGUGCCCAC ((((............((((((((((((..((((....)))).((.(((((........)))))))))))).)))))))(((((..--.......)))))......))))... ( -35.00, z-score = -1.40, R) >droSec1.super_3 7055020 111 - 7220098 GGCAAUUAGAGAGCUAGCGAAAUGGCCAUUUGACUAUUGUCAUGGCUCAUCCACAUGUCGAUGACUUGGCUAACUUUCUGGUGGUG--CCACGUUUUGCCUAGUGGUGCCCAC ....(((((((((.((((.((...((((..((((....))))))))(((((........))))).)).)))).)))))))))((..--((((..........))))..))... ( -40.30, z-score = -2.59, R) >droSim1.chr2L 11472488 111 - 22036055 GGCAAUUAGAGAGCUAGCGAAAUGGCCAUUUGACUAUUGUCAUGGCUCAUCCACAUGUCGAUGACUUGGCUAACUUUCUGGUGGUG--CCACGUUUUGCCUAGUGGUGCCCAC ....(((((((((.((((.((...((((..((((....))))))))(((((........))))).)).)))).)))))))))((..--((((..........))))..))... ( -40.30, z-score = -2.59, R) >consensus GGCAAUUAGAGAGCUAGCGAAAUGGCCAUUUGACUAUUGUCAUGGCUCAUCCACAUGUCGAUGACUUGGCUAACUUUCUGGUGGUG__CCACGUUUUGCCUAGUGGUGCCCAC ((((..(((((((.((((.((...((((..((((....))))))))(((((........))))).)).)))).)))))))((((....))))..............))))... (-25.10 = -27.42 + 2.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:33:14 2011