| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,157,699 – 17,157,799 |
| Length | 100 |
| Max. P | 0.909780 |
| Location | 17,157,699 – 17,157,799 |
|---|---|
| Length | 100 |
| Sequences | 10 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 62.03 |
| Shannon entropy | 0.76185 |
| G+C content | 0.39241 |
| Mean single sequence MFE | -15.76 |
| Consensus MFE | -8.06 |
| Energy contribution | -8.15 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.57 |
| Mean z-score | -0.68 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.21 |
| SVM RNA-class probability | 0.909780 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17157699 100 - 22422827 UUUUCCUUGCCUUUUUCCUAGUUUUUCACCACUCGCCUUCAUUCUUUCUACUUUGUUGGAUGGGCUAAUAAGUUUUAAUUAGUGCAUUUAA-UGACUACUC-------------- ....................................................(..(((((((.((((((........)))))).)))))))-..)......-------------- ( -13.40, z-score = -0.67, R) >droPer1.super_18 288188 94 - 1952607 -------CACCUUCUGGCACGCCCUCCCCAGCUCCACAUCAUUCUUUCUUCAUUGUUGGAUGAGCUAAUAAGCUUCAAUUAGCGCAUUUAAUUGACUGUUU-------------- -------......((((..........))))..................(((..((((((((.((((((........)))))).)))))))))))......-------------- ( -15.20, z-score = -0.14, R) >dp4.chrXL_group1e 1448320 94 - 12523060 -------CACCUUCUGGCACGCCCUCCCCAGCUCCACAUCAUUCUUUCCUCAUUGUUGGAUGAGCUAAUAAGCUUCAAUUAGCGCAUUUAAUUGACUGUUU-------------- -------......((((..........))))..................(((..((((((((.((((((........)))))).)))))))))))......-------------- ( -15.10, z-score = -0.11, R) >droAna3.scaffold_13248 1529088 114 + 4840945 UCUUCUUUGGCGCUUCUUUGGAGCUUUCCU-CGAGAGUCCAUUCUUUCUACUUAGUUGGAUGAGCUAAUAAGUUUUAAUUAGUGCAUUUAAUUGACUGAAGACUGAAGACUAAGA ...((((..(..((((..((((.(((((..-.)))))))))..........(((((((((((.((((((........)))))).)))))))))))..)))).)..))))...... ( -29.70, z-score = -1.26, R) >droSim1.chrX 13337132 100 - 17042790 UUUUCCUUGCCUUUUUCCUAGUUUUUCCCCACUCGCCUUCAUUCCUUCUACUUUGUUGGAUGAGCUAAUACGUUUUAAUUAGUGCAUUUAA-UGACUACUA-------------- ....................................................(..(((((((.((((((........)))))).)))))))-..)......-------------- ( -11.30, z-score = -1.02, R) >droSec1.super_17 1001083 100 - 1527944 UUUUCCUUGCCUUUUUCCUAGUUUUUUCCCACUUGCCUUCAUUUCUUCUACUUUGUUGGAUGGGCUAAUACGUUUUAAUUAGUGCAUUUAA-UGACUACUA-------------- ....................................................(..(((((((.((((((........)))))).)))))))-..)......-------------- ( -13.40, z-score = -1.06, R) >droYak2.chrX 15764629 99 - 21770863 UUUUCCUUGCC--UUUCCUAGUUUUUACCCACUCGCCUUCAUUCUUUCUACUUUGUUGGGUGAGCUAAUAAGUUUUAAUUAGUGCAUUUAAUUGCCUGCUC-------------- ........((.--....((((((...((...(((((((.((............))..))))))).......))...)))))).(((......)))..))..-------------- ( -14.00, z-score = -0.62, R) >droEre2.scaffold_4690 7497096 99 - 18748788 UUUUCCUUGUC--UUUCCCAGUUCUUCCCCACUCGCCUUCAUUCUUUCUACUUUGUUGGAUGAGCUAAUAAGUUUUAAUUAGUGCAUUUAAUUGCCUGCUC-------------- ...........--.....(((.................((((((...(......)..))))))((((((........))))))(((......))))))...-------------- ( -10.70, z-score = -0.13, R) >droMoj3.scaffold_6680 4794277 80 + 24764193 -------------------CACGUAUCGCUGUUAGCCUGGUCUGCUGCUGUUUGAUUGCAUUUAUUGCAUAAUUU--GUUAAUGAAUGGAAUGUCAUGCCA-------------- -------------------...((((.((...((((..((....))))))....(((.(((((((((((.....)--).))))))))).))))).))))..-------------- ( -14.60, z-score = 1.15, R) >droGri2.scaffold_15203 5553264 86 + 11997470 -------CACUUGCGUCCGAUGGCGUCUCGUCCUCCCAUCGUU--UGCAACUCCAUUUGA-GAACUCAUCAGUCUUAAUUACCGCAUUUAAUUGCA------------------- -------...(((((..((((((.(.........)))))))..--)))))......((((-((.((....)))))))).....(((......))).------------------- ( -20.20, z-score = -2.97, R) >consensus UUUUCCUUGCCUUUUUCCUAGUUCUUCCCCACUCGCCUUCAUUCUUUCUACUUUGUUGGAUGAGCUAAUAAGUUUUAAUUAGUGCAUUUAAUUGACUGCUA______________ ......................................................((((((((.((((((........)))))).))))))))....................... ( -8.06 = -8.15 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:52:03 2011