| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,144,917 – 17,145,020 |
| Length | 103 |
| Max. P | 0.887004 |
| Location | 17,144,917 – 17,145,020 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 71.50 |
| Shannon entropy | 0.54309 |
| G+C content | 0.33588 |
| Mean single sequence MFE | -19.36 |
| Consensus MFE | -9.55 |
| Energy contribution | -11.41 |
| Covariance contribution | 1.87 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.08 |
| SVM RNA-class probability | 0.887004 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17144917 103 - 22422827 ACAUCAGUGAAAUCAAA------GAUUAGGCAUCGCAAAUUGCUACAAGCUUAAUUAAUAAUUGACAC--CGAUUGCCCAAUUGCUUAAUUUCUUAAUGGAUUUCAUUAUG .(((.(((((((((.((------(((((((((..((.....))...............((((((....--))))))......)))))))..))))....)))))))))))) ( -20.80, z-score = -1.89, R) >droWil1.scaffold_181096 7598697 95 - 12416693 ---------ACACCUUG---GCUGUCUCUGCUUUGCCCCCGGUCA-AGUUUUAAUUAAUAAUGGAAA--GUGAUU-CGAAUUUAAUUUGGUUUAAUAUAGAUUUAUACAUA ---------......((---..((..((((..(((..((..((.(-(((((.(((((....(....)--.)))))-.)))))).))..))..)))..))))..))..)).. ( -11.80, z-score = 1.38, R) >droSim1.chrX 13324262 103 - 17042790 ACAUCAGUGAAAUCAAA------GAUUAGGCAUCGCAAAUUGCCACAAACUUAAUUAAUAAUUGACAC--CGAUUGCCCAAUUGCUUAAUUUCUUAAUGGAUUUCAUUAUG .(((.(((((((((.((------((...((((........))))........((((((((((((.((.--....))..)))))).))))))))))....)))))))))))) ( -20.90, z-score = -2.41, R) >droSec1.super_17 988323 85 - 1527944 ACAUCAGUGAAAUCAAA------GAUUAGGCAUCGCAAAUUGCCACAAAC--------------------CGAUUGCCCAAUUGCUUAAUUUCUUAAUGGAUUUCAUUAUG .(((.(((((((((.((------(((((((((..((((.(((........--------------------))))))).....)))))))..))))....)))))))))))) ( -19.90, z-score = -2.72, R) >droYak2.chrX 15751918 111 - 21770863 GCAUCAGUGAAAUCAAAUUCAACGAUUAAGCAUCGCAAAUUGCCACAAACUUAAUUAGUAAUUGACUCCACGAUUGCCCAAUUGCUUAAUUUCUUAAUGGAUUUCAUAAUG ......((((((((.........(((((((((..((.....))..............(((((((......))))))).....)))))))))........)))))))).... ( -22.93, z-score = -2.82, R) >droEre2.scaffold_4690 7484844 105 - 18748788 GCAUCAGUGAAAUCAAA------GAUUAGGCAUCGCGAAUUGCCACAAACUUAAUUAAUAAUUGACACCACGAUUGCCCAAUGGCUUAAUUUCUUAAUGGAUUUCCUAAUG .(((.((.((((((.((------((...((((........))))........((((((.(((((......)))))(((....)))))))))))))....)))))))).))) ( -19.80, z-score = -1.24, R) >consensus ACAUCAGUGAAAUCAAA______GAUUAGGCAUCGCAAAUUGCCACAAACUUAAUUAAUAAUUGACAC__CGAUUGCCCAAUUGCUUAAUUUCUUAAUGGAUUUCAUUAUG ......((((((((.........((((((((...(((...)))...............((((((......)))))).......))))))))........)))))))).... ( -9.55 = -11.41 + 1.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:52:03 2011