| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,142,448 – 17,142,545 |
| Length | 97 |
| Max. P | 0.650182 |
| Location | 17,142,448 – 17,142,545 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 82.27 |
| Shannon entropy | 0.31090 |
| G+C content | 0.50824 |
| Mean single sequence MFE | -30.90 |
| Consensus MFE | -21.26 |
| Energy contribution | -22.98 |
| Covariance contribution | 1.72 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.650182 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17142448 97 - 22422827 GAAGCUUGUUAAACGGAUGGGCACAGGAGGAAUGUAUCCUGCCCAAAUAGCAUUUUCGUGGAGUGUUAACUUUCCGAGAGUCAGCGCAAAUCUGUUG ...........((((((((((((..(((........)))))))).....(((((((((..((((....))))..)))))))..))....))))))). ( -31.20, z-score = -2.40, R) >droSim1.chrX 13316515 97 - 17042790 GAAGCUUGUUAAGCGGAUGGGCACAGGAGGAAGGUAUCCUGCCCACAUAGCGUUUUCGUGGAGUUGUAACUUUCCGAGAGUCAUCGCAAAUCUGUUG ...........((((((((((((..(((........)))))))).....(((((((((..((((....))))..))))))....)))..))))))). ( -30.30, z-score = -1.46, R) >droSec1.super_17 985862 97 - 1527944 GAAGCUUGUUAAGCGGAUGGGCACAGGAGGAAGGUAUCCUGCCCACAUAGCGUUUUCGUGGAGUUGUAACUUUCCGAGAGUCAUCGCAAAUCUGUUG ...........((((((((((((..(((........)))))))).....(((((((((..((((....))))..))))))....)))..))))))). ( -30.30, z-score = -1.46, R) >droYak2.chrX 15749340 89 - 21770863 --------GAAGCUGGUUGGGCACAGGAGGAAGGUAUCCUGCCCGAGUUGCAAUUGCGCGGAGUGUAAACUUGGCGAGAGGCAGCGCAAAUCUGUUG --------...((...(((((((..(((........))))))))))(((((.....(((.((((....)))).)))....))))))).......... ( -33.40, z-score = -1.89, R) >droEre2.scaffold_4690 7482244 97 - 18748788 GAAGCUUGUUAAACGGAUGGGCACAGGAGGAAGGUAUCCUGCCCAAGUUACGAUUUCGUGGAGUCUAAAGUUGGCGAGAGGCAACGCGAAGCGGUUG ...((((((.....(((((((((..(((........))))))))...(((((....))))).))))...((((.(....).)))))).))))..... ( -29.30, z-score = -1.05, R) >consensus GAAGCUUGUUAAACGGAUGGGCACAGGAGGAAGGUAUCCUGCCCAAAUAGCGUUUUCGUGGAGUGUUAACUUUCCGAGAGUCAGCGCAAAUCUGUUG ...........((((((((((((..(((........)))))))).....(((((((((..((((....))))..))))))....)))..))))))). (-21.26 = -22.98 + 1.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:52:02 2011