| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,135,848 – 17,135,973 |
| Length | 125 |
| Max. P | 0.985213 |
| Location | 17,135,848 – 17,135,973 |
|---|---|
| Length | 125 |
| Sequences | 7 |
| Columns | 126 |
| Reading direction | reverse |
| Mean pairwise identity | 66.21 |
| Shannon entropy | 0.69517 |
| G+C content | 0.52460 |
| Mean single sequence MFE | -43.37 |
| Consensus MFE | -15.48 |
| Energy contribution | -16.92 |
| Covariance contribution | 1.44 |
| Combinations/Pair | 1.75 |
| Mean z-score | -2.21 |
| Structure conservation index | 0.36 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.19 |
| SVM RNA-class probability | 0.985213 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17135848 125 - 22422827 CUAAUGAGCG-AUUUUAUAGGGCCGGAAACAGUUCGGCGGUUGUUGGAGGCGGAUGUGCCCUCGACUUGCCUGGCCGAGGGCAAAAGCCUUCUGGACAGAGACAACUGUGAUAACGACUUCUGAAU .....(((((-...((((((.((((((.....))))))(.(((((((((((.....((((((((.((.....)).))))))))...))))))..)))))...)..))))))...)).)))...... ( -44.90, z-score = -2.24, R) >droWil1.scaffold_181096 7592961 104 - 12416693 -CAGUCGAUGCAUUUAAAUGGUCCCGAAUUGGUUCAUUAUUUACUUCAAUUGCAC------UCAG---ACAUGGCGCCAGCCAAAAACUCUAUCAAAGACAACGAUU-UGUCAAC----------- -..(((((((((..((((((((.((.....))...)))))))).......)))).------)).)---)).((((....))))..............(((((....)-))))...----------- ( -19.40, z-score = -0.56, R) >droAna3.scaffold_13248 1510324 125 + 4840945 CUGGGCAACA-GUUUGAUGGGACCGAAGCUGGUCCACCGGAUGCUGCAGGUGGACACCUCGUCGAUCUGCGUGGCCGAGGGCAGAUCGCCGUCUGCCGAGCCAGACUGUGAUAAGGAUAACUAGAU ((((.(.(((-(((((...((((((....)))))).......(((((((((.(((.....))).)))))).((((.((.(((.....))).)).)))))))))))))))......)....)))).. ( -50.80, z-score = -1.78, R) >droEre2.scaffold_4690 7477273 124 - 18748788 CUAAUGGCCG-AUUUCACAGGGCCGGAAACAGUUCAGCGAUUGUUGAAUGCGGAUGUGGCCUCGACCAGUCUGGCCGAGGGCAAAGGCGUCCUGGACAAAGGCAACUGUGAU-ACGACCACUGAAU ....(((.((-...((((((.((((....).(((((((....)))))))..(((((((.(((((.((.....)).))))).)....))))))........)))..)))))).-.)).)))...... ( -45.70, z-score = -1.90, R) >droYak2.chrX 15744169 125 - 21770863 CUAGUGGCCG-AUUUCAUGGGGCCGGAAACACUUCGGCGGUUGCUGAAGGCGGAUGUGUCCUCGACCAAUCUGGCCGAGGGCAGAAGCCUAUUGGACAGAGACAACUGUGAUAACGACUACUGAAU .((((((.((-...((((((.((((((.....))))))(.((((..(((((...(.((((((((.((.....)).)))))))).).)))).)..).)))...)..))))))...)).))))))... ( -48.20, z-score = -3.05, R) >droSec1.super_17 976737 125 - 1527944 CUAGUGAGCG-AUUUCAUAGGGCCGGAAACAGUUCGGCGAUUGUUGAAGGCGGAUAUGCCCUCGACCAGCCUGGCAGAGGGCAAAAGCCUUCUGGACUGAGGGAACUGUGAUAACGACGUUUGAAU .....(((((-...((((((..(((....)((((((((....(((((.((((....)))).)))))..)))....(((((((....))))))))))))...))..))))))......))))).... ( -47.30, z-score = -3.04, R) >droSim1.chrX 13309753 125 - 17042790 CUAGUGAGCG-AUUUCAUAGGGCCGGAAACAGUUCGGCGAUUGUUGAAGGCGGAUAUGCCCUCGACCAGCCUGGCAGAGGGCAAAAGCCUUCUGGACUGAGGCAACUGUGAUAACGACGUUUGAAU .....(((((-...((((((.((((....)((((((((....(((((.((((....)))).)))))..)))....(((((((....))))))))))))..)))..))))))......))))).... ( -47.30, z-score = -2.92, R) >consensus CUAGUGAGCG_AUUUCAUAGGGCCGGAAACAGUUCGGCGAUUGUUGAAGGCGGAUAUGCCCUCGACCAGCCUGGCCGAGGGCAAAAGCCUUCUGGACAGAGACAACUGUGAUAACGACGACUGAAU ((.(((((.....))))).)).......((((((...........((((((.....(((((((..((.....))..)))))))...))))))...........))))))................. (-15.48 = -16.92 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:52:01 2011