| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,121,046 – 17,121,119 |
| Length | 73 |
| Max. P | 0.692529 |
| Location | 17,121,046 – 17,121,119 |
|---|---|
| Length | 73 |
| Sequences | 6 |
| Columns | 74 |
| Reading direction | reverse |
| Mean pairwise identity | 85.00 |
| Shannon entropy | 0.28550 |
| G+C content | 0.47032 |
| Mean single sequence MFE | -21.25 |
| Consensus MFE | -13.42 |
| Energy contribution | -13.32 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.39 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.692529 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17121046 73 - 22422827 GUUGAUUGUCGAUCCAUUGUUGGCCACUGCCGGCCGCG-GUGAUUAAAUGCCGAUAAUUUGUUUGACUUUCGGC (((((..(((((...(((((((((((((((.....)))-))).......)))))))))....)))))..))))) ( -26.31, z-score = -3.09, R) >droEre2.scaffold_4690 7462866 73 - 18748788 GUUGAUUGUCGAUCCAUUGUUGCCCACUGCCGGCCGCG-GUGAUUAAAUGUCGAUAAUUUGUUUGACUUUCAGC (((((..(((((..((((((.(((.......))).)))-)))..(((((.......))))).)))))..))))) ( -20.10, z-score = -1.89, R) >droYak2.chrX 15729556 73 - 21770863 GUUGAUUGUCGUUCCAUUGUUGCCCACUGCCGGCCGCA-GUGAUUAAAUGCCGAUAAUUUGUUUGACUUUCAGC (((((..((((..(.(((((((.(((((((.....)))-))).......).)))))))..)..))))..))))) ( -19.81, z-score = -2.38, R) >droSec1.super_17 957640 73 - 1527944 GUUGAUUGUCGAUCCAUUGUUGGCCACUACCGGCCGCG-GUGAUUAAAUGCCGAUAAUUUGUUUGACUUUCGGC (((((..(((((...(((((((((...(((((....))-))).......)))))))))....)))))..))))) ( -23.90, z-score = -2.61, R) >droSim1.chrX 13290787 73 - 17042790 GUUGAUUGUCGAUCCAUUGUUGGCCACUGCCGGCCGCG-GUGAUUAAAUGCCGAUAAUUUGUUUGACUUUCGGC (((((..(((((...(((((((((((((((.....)))-))).......)))))))))....)))))..))))) ( -26.31, z-score = -3.09, R) >droMoj3.scaffold_6473 5590572 73 - 16943266 GCUUGUUGAUACUCUGUUUUAGGUC-UUACCGUCCUCAUGCGAUCAAACGGCGUUAAUUUGUUUGAUUUGUGGC (((............((...(((.(-.....).)))...))((((((((((.......))))))))))...))) ( -11.10, z-score = 0.83, R) >consensus GUUGAUUGUCGAUCCAUUGUUGGCCACUGCCGGCCGCG_GUGAUUAAAUGCCGAUAAUUUGUUUGACUUUCGGC (((((..(((((..(((...(((((......)))))...)))..(((((.......))))).)))))..))))) (-13.42 = -13.32 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:51:56 2011