| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,079,367 – 17,079,476 |
| Length | 109 |
| Max. P | 0.648336 |
| Location | 17,079,367 – 17,079,476 |
|---|---|
| Length | 109 |
| Sequences | 4 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 66.51 |
| Shannon entropy | 0.51316 |
| G+C content | 0.34599 |
| Mean single sequence MFE | -21.07 |
| Consensus MFE | -12.19 |
| Energy contribution | -12.38 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.03 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.648336 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17079367 109 - 22422827 AAUUCACUGGUUUGUUCUACACUGAGCGAAAAGUGAAGGUGUGUUGUAAGAUUCAAUUUCAUUUUAAAUAAGGUGGGGUUUAUUUAUAGCA-UUGCGUAUCUUCCCAAAU- ..((((((..(((((((......))))))).)))))).((((((((((((....(((..((((((....))))))..)))..)))))))))-.)))..............- ( -27.80, z-score = -2.49, R) >droEre2.scaffold_4690 7426087 107 - 18748788 AACUCACUGCUUUGUUCUACACUGAGCGAAAAGUGGAUGUGUGUUGUGCUUAGCCAUUUCAUUUUGCAUGAGUAGAG----CCUAACAUCAUUUAAGUUUAAUAUCAGAAC ((((((((..(((((((......))))))).))))(((((..(((.((((((..((........))..)))))).))----)...))))).....))))............ ( -26.50, z-score = -1.21, R) >droSec1.super_17 920734 83 - 1527944 AAUUCACUGGUUUGUUCUACACUGAGCAAAAACUGGGUGUGUGUU----UAUUUGAUUUC---------------------AUAUAUAGCA-UUGCG-AUCUUUCCAAAU- ......(..((((((((......)))))..)))..)(((((((..----..........)---------------------))))))....-(((.(-(....)))))..- ( -14.20, z-score = -0.04, R) >droSim1.chrX 13259943 84 - 17042790 AAUUCACUGGUUUGUUCUGCACUGAGCAAAAAGUGGGUGUGUGUU----UAUUUGAUUUU---------------------AUUUAUAGCA-UUGCGUAUCUUUCCAAAU- .(((((((..(((((((......))))))).)))))))(((((((----....(((....---------------------..))).))))-.)))..............- ( -15.80, z-score = -0.40, R) >consensus AAUUCACUGGUUUGUUCUACACUGAGCAAAAAGUGGAUGUGUGUU____UAUUCGAUUUC_____________________AUUUAUAGCA_UUGCGUAUCUUUCCAAAU_ .(((((((..(((((((......))))))).)))))))......................................................................... (-12.19 = -12.38 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:51:52 2011