| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,063,355 – 17,063,429 |
| Length | 74 |
| Max. P | 0.762751 |
| Location | 17,063,355 – 17,063,429 |
|---|---|
| Length | 74 |
| Sequences | 5 |
| Columns | 77 |
| Reading direction | forward |
| Mean pairwise identity | 91.59 |
| Shannon entropy | 0.14129 |
| G+C content | 0.49730 |
| Mean single sequence MFE | -15.40 |
| Consensus MFE | -13.88 |
| Energy contribution | -13.88 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.762751 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17063355 74 + 22422827 ACUUCAUUCCCCGGGUUCUCUUCCAUUGCAUUC---GAAUCAAUUCCGCUGAAUGCCCAGCCAACUCAAUCGCCGGG .........(((((((((...............---)))).......((((......))))...........))))) ( -13.46, z-score = -0.20, R) >droEre2.scaffold_4690 7409547 74 + 18748788 ACUUCAUUCCCCGGGUUCUCUUCCAUUGCAUUU---GAAUCCAUUCUGCUGAAUUUCCAGCCAACUCAAUCGCCGGG .........(((((((((...............---)))))).....((((......)))).............))) ( -15.36, z-score = -1.50, R) >droYak2.chrX 15673624 74 + 21770863 AUUUCAUUCCCCGGGUUCUCUUCCAUUGCAUUU---GAAUCCAUUCCGCUGAAUUUUCAGCCAACUCAAUCGCCGGG .........(((((((((...............---)))))).....(((((....))))).............))) ( -16.66, z-score = -2.02, R) >droSec1.super_17 904891 77 + 1527944 ACUUCAUUCCCCGGGUUCUCUUCCAUUGCAUUCAUCGAAUCAGUUCCGCUGAAUUCCCAGCCAACUCAAUCGCCGGG .........(((((..........((((.((((...))))))))...((((......))))...........))))) ( -15.60, z-score = -1.40, R) >droSim1.chrX 13245193 77 + 17042790 ACUUCAUUCCCCGGGUUCUCUUCCAUUGCAUUCAUCGAAUCAAUUUCGCUGAAUUCCCAGCCAACUCAAUCACCGGG .........(((((..........((((.((((...))))))))...((((......))))...........))))) ( -15.90, z-score = -2.51, R) >consensus ACUUCAUUCCCCGGGUUCUCUUCCAUUGCAUUC___GAAUCAAUUCCGCUGAAUUCCCAGCCAACUCAAUCGCCGGG .........(((((..........((((.((((...))))))))...((((......))))...........))))) (-13.88 = -13.88 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:51:50 2011