| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,060,603 – 17,060,701 |
| Length | 98 |
| Max. P | 0.515343 |
| Location | 17,060,603 – 17,060,701 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 67.62 |
| Shannon entropy | 0.58566 |
| G+C content | 0.42455 |
| Mean single sequence MFE | -18.82 |
| Consensus MFE | -6.83 |
| Energy contribution | -8.17 |
| Covariance contribution | 1.34 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.36 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.515343 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17060603 98 - 22422827 ------UCCUUUCCAG--UUGAAACUGAAACCCAAUCGUUUUAGUUCAUGGAACCCUCUGCAAUCGAACCGAUAUUCAGCUAGUUCUCUUCUGGGAAAACCA-ACUG ------...(((((((--.((((.(((((((......))))))))))).(((((...(((..((((...))))...)))...)))))...))))))).....-.... ( -22.50, z-score = -2.28, R) >droEre2.scaffold_4690 7406922 97 - 18748788 ------UCCUUUCUAG--UGAAAACUGAAACCCAAUCGUUUUAGUACGUGGAACCCUCUGCAAUCGAACC-AUAUUCAGCUAGUUCUUUUCUGAGAAACUCA-ACUG ------......((((--((((.((((((((......))))))))..(..((....))..).........-...)))).))))(((((....))))).....-.... ( -18.70, z-score = -1.80, R) >droYak2.chrX 15670146 97 - 21770863 ------UUCUUUCUAG--UUUAAACUGAAACCCAAUCGUUUUAGUUCACGGAACCCUCUGCAAUCGAACC-AUAUUCAGCUAGUUGUUUUCUGGGAAACGCA-AUUG ------......((((--((..(((((((((......)))))))))..((((....))))..........-......))))))..(((((....)))))...-.... ( -16.30, z-score = -0.39, R) >droSec1.super_17 902283 86 - 1527944 ------UCCUUCCCCG--UUGAAACUGAAACCCAAUCGUUUUAGUUCAUGGAACCCUCUGCAA------------UAAGCUAGUUCUCUUCUGGGAAAACCA-ACUG ------...(((((..--.((((.(((((((......))))))))))).(((((.....((..------------...))..))))).....))))).....-.... ( -18.20, z-score = -2.17, R) >droSim1.chrX 13242915 92 - 17042790 UCUUUCUAAUCUCCCG--UUGAAACUGAAACCCAAUCGUUUUAGUUCAUGGAACCCUCUGCAA------------UAAGCUAGUUCUCUUCUGGGAAAACCA-ACUG ...........((((.--.((((.(((((((......))))))))))).(((((.....((..------------...))..))))).....))))......-.... ( -18.20, z-score = -2.11, R) >droPer1.super_18 181586 100 - 1952607 ------UCCCUCCCAGAACCGACACCUAGGCCGAGUGGCACUGCCGCACGUAAAUUACUCUCAUUUUGGAGGAUUUUUCCUCUUCCAUUCCUUAGAAUUUCACAAU- ------...................(((((.((.(((((...))))).)).................((((((....)))))).......)))))...........- ( -19.00, z-score = -0.71, R) >consensus ______UCCUUUCCAG__UUGAAACUGAAACCCAAUCGUUUUAGUUCAUGGAACCCUCUGCAAUCGAACC_AUAUUCAGCUAGUUCUCUUCUGGGAAAACCA_ACUG .........(((((((......(((((((((......)))))))))...(((....)))...............................))))))).......... ( -6.83 = -8.17 + 1.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:51:49 2011