| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,060,228 – 17,060,304 |
| Length | 76 |
| Max. P | 0.613279 |
| Location | 17,060,228 – 17,060,304 |
|---|---|
| Length | 76 |
| Sequences | 5 |
| Columns | 77 |
| Reading direction | reverse |
| Mean pairwise identity | 69.69 |
| Shannon entropy | 0.53837 |
| G+C content | 0.39196 |
| Mean single sequence MFE | -16.42 |
| Consensus MFE | -7.90 |
| Energy contribution | -9.26 |
| Covariance contribution | 1.36 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.28 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.613279 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17060228 76 - 22422827 UGGCCUGGCUAUAUUGAAAAUGACGCAGUCA-ACUGCUAUUUUGUUGUAGCCUGUUGUUUUUGCCAUAUAACUAACU ((((..(((((((...((((((..((((...-.))))))))))..)))))))..........))))........... ( -18.80, z-score = -1.86, R) >dp4.chrXL_group1e 1339600 57 - 12523060 ------------GUAGAAAGAAAAAAAGUGACGCUAUAAGUACGUUCGGGCCAGUCAUUACAUACAUAC-------- ------------..............(((((((((....(......).)))..))))))..........-------- ( -6.20, z-score = 0.15, R) >droEre2.scaffold_4690 7406557 72 - 18748788 UGGCCUGACUAUAUUGAAAAUGACGCAGGCA-ACUGCUAUUUUGUUGUAGCCAGUUGUUUUUGCCA--CAACUAU-- (((((((.(((((...((((((..((((...-.))))))))))..))))).)))........))))--.......-- ( -19.10, z-score = -1.76, R) >droSec1.super_17 901901 76 - 1527944 UGGCGUGGCUAUAUUGAAAAUGACGCAGUCA-ACUGCUGUUUUGUUGUAGCCUGUUGUUUUUGCCAUAUAACUAACU (((((.(((((((..((((.....((((...-.))))..))))..))))))).........)))))........... ( -19.80, z-score = -1.59, R) >droSim1.chrX 13242533 76 - 17042790 UGGCCUGGCUAUAUUGAAAAUGACGCAGUCA-ACUGCUGUUUUGUUGUAGCCUGUUGUUUUUGCCAUAUAACUAACU ((((..(((((((..((((.....((((...-.))))..))))..)))))))..........))))........... ( -18.20, z-score = -1.36, R) >consensus UGGCCUGGCUAUAUUGAAAAUGACGCAGUCA_ACUGCUAUUUUGUUGUAGCCUGUUGUUUUUGCCAUAUAACUAACU ......(((((((..((((.....((((.....))))..))))..)))))))......................... ( -7.90 = -9.26 + 1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:51:48 2011