| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,058,637 – 17,058,722 |
| Length | 85 |
| Max. P | 0.987616 |
| Location | 17,058,637 – 17,058,722 |
|---|---|
| Length | 85 |
| Sequences | 5 |
| Columns | 89 |
| Reading direction | forward |
| Mean pairwise identity | 90.73 |
| Shannon entropy | 0.16707 |
| G+C content | 0.37321 |
| Mean single sequence MFE | -20.80 |
| Consensus MFE | -17.62 |
| Energy contribution | -18.02 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.81 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.29 |
| SVM RNA-class probability | 0.987616 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17058637 85 + 22422827 CGUCUGUUUAUUUUGUUUGGCUGGAAAACCAGAGAUA----UGAGUGUACAAAAAAUACAGACAAAUACAGCGUAACAGACCCAAGAUG .(((((((.....((((((.((((....)))).....----...((((.......))))...))))))......)))))))........ ( -18.10, z-score = -1.88, R) >droEre2.scaffold_4690 7405015 88 + 18748788 CGUCUGUUUAUUUUGUUUGCCUGGGAAACCAGGGAUACAUAUGAGUGUACAAAAAAUACAGACAAAUACAGCUUA-UAUGCCCAAGAUG .((((((...((((((...(((((....))))).((((......))))))))))...)))))).......((...-...))........ ( -26.90, z-score = -3.96, R) >droYak2.chrX 15668210 85 + 21770863 CGUCUGUUUAUUUUGUAUGCCUGGGAAACCAACGAUA----UGAGUGCACAAAAAAUACAGACAGAUACAGCGUAUAAAACCAAAGAUG .((((((...((((((..((((((....)))......----.).))..))))))...)))))).......................... ( -18.21, z-score = -2.12, R) >droSec1.super_17 900307 84 + 1527944 CGUCUGUUUAUUUUGUUUGCCUGGGAAACCAGAGAUA----UGAGUGUACAAAAAAUACAGACAAAUACAGCGUA-UAAACCCAAGAUG .((((((...((((((.(((((((....)))).....----...))).))))))...))))))............-............. ( -20.40, z-score = -3.05, R) >droSim1.chrX 13240934 84 + 17042790 CGUCUGUUUAUUUUGUUUGCCUGGGAAACCAGAGAUA----UGAGUGUACAAAAAAUACAGACAAAUACAGCGUA-UAAACCCAAGAUG .((((((...((((((.(((((((....)))).....----...))).))))))...))))))............-............. ( -20.40, z-score = -3.05, R) >consensus CGUCUGUUUAUUUUGUUUGCCUGGGAAACCAGAGAUA____UGAGUGUACAAAAAAUACAGACAAAUACAGCGUA_UAAACCCAAGAUG .((((((...((((((.(((((((....))))............))).))))))...)))))).......................... (-17.62 = -18.02 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:51:45 2011