Locus 15032

Sequence ID dm3.chrX
Location 17,058,374 – 17,058,477
Length 103
Max. P 0.952518
window20715 window20716 window20717

overview

Window 5

Location 17,058,374 – 17,058,474
Length 100
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 72.38
Shannon entropy 0.46921
G+C content 0.30784
Mean single sequence MFE -18.22
Consensus MFE -10.20
Energy contribution -10.60
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.29
Structure conservation index 0.56
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.25
SVM RNA-class probability 0.612498
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 17058374 100 + 22422827
CUCAAAGGGUACACGUGCUGAUAAAUAAUUCGU--UUGUGUAAAGCCGUUACAUUAUUAGUAAUGAACUUGAAACUGACUUUUAAGGAGUCAGCUAUAAUUG
.((((.((.((((((.((.((........))))--.))))))...))(((.(((((....))))))))))))..(((((((.....)))))))......... ( -22.70, z-score =  -1.81, R)
>droEre2.scaffold_4690 7404777 86 + 18748788
CUAAAAGGGUGUACUCGUUGAUAAAUCAUU----------------CGUUACAUUGCUAGUAAUGAACUUGAAACUGACAUUUUAGGAGUCAGCUAUAAUUC
......(((....)))((((((......((----------------((((((.......))))))))(((((((......))))))).))))))........ ( -17.70, z-score =  -1.34, R)
>droYak2.chrX 15667956 102 + 21770863
UUAAAAGGUUGUACGCGUUUAUAAAUAAUAAAUAAUUGUGCACAGGCGUUACACUGCUAGUAAUGAACUUGAAACUGACUUUUAAGGAGUCAGCUAUAAUUC
.........((((((.((((((.....))))))...))))))((((((((((.......))))))..))))...(((((((.....)))))))......... ( -20.30, z-score =  -0.85, R)
>droSec1.super_17 900053 91 + 1527944
CUAAAAGCUGAUAAAUUGUAUUAUUUUUUGUAA-----------AGCGUUACAUUAUUAGUAAUGAACUUGAAACUGACUUAUAAGGAGCCAGCUAUAAAUG
.....(((((.....((((((((((((..((..-----------..((((((.......)))))).))..)))).)))..))))).....)))))....... ( -13.40, z-score =  -0.32, R)
>droSim1.chrX 13240680 91 + 17042790
CUAAAAGAUGAUAAAUUGUAUUAUUUUUGUAAA-----------GCCGUUACAUUAUUAGUAAUGAACUUGAAACUGACUUAUAAGGAGUCAGCUAUAAAUG
...((((((((((.....)))))))))).....-----------..((((((.......)))))).........(((((((.....)))))))......... ( -17.00, z-score =  -2.11, R)
>consensus
CUAAAAGGUUAUACAUGGUAAUAAAUAAUUAAA___________GCCGUUACAUUAUUAGUAAUGAACUUGAAACUGACUUUUAAGGAGUCAGCUAUAAUUG
..............................................((((((.......)))))).........(((((((.....)))))))......... (-10.20 = -10.60 +   0.40)

alignment

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secondary structure

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dotplot

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Window 6

Location 17,058,374 – 17,058,474
Length 100
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 72.38
Shannon entropy 0.46921
G+C content 0.30784
Mean single sequence MFE -14.40
Consensus MFE -10.36
Energy contribution -10.24
Covariance contribution -0.12
Combinations/Pair 1.13
Mean z-score -1.40
Structure conservation index 0.72
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.44
SVM RNA-class probability 0.940342
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 17058374 100 - 22422827
CAAUUAUAGCUGACUCCUUAAAAGUCAGUUUCAAGUUCAUUACUAAUAAUGUAACGGCUUUACACAA--ACGAAUUAUUUAUCAGCACGUGUACCCUUUGAG
.......((((((((.......))))))))((((((((((((....))))).)))((...(((((..--...................))))).)).)))). ( -16.80, z-score =  -1.45, R)
>droEre2.scaffold_4690 7404777 86 - 18748788
GAAUUAUAGCUGACUCCUAAAAUGUCAGUUUCAAGUUCAUUACUAGCAAUGUAACG----------------AAUGAUUUAUCAACGAGUACACCCUUUUAG
(((((..(((((((.........)))))))...)))))...........((((...----------------..(((....))).....))))......... ( -13.80, z-score =  -1.31, R)
>droYak2.chrX 15667956 102 - 21770863
GAAUUAUAGCUGACUCCUUAAAAGUCAGUUUCAAGUUCAUUACUAGCAGUGUAACGCCUGUGCACAAUUAUUUAUUAUUUAUAAACGCGUACAACCUUUUAA
(((((..((((((((.......))))))))...))))).......((.(((((.......))))).....(((((.....))))).)).............. ( -18.80, z-score =  -1.76, R)
>droSec1.super_17 900053 91 - 1527944
CAUUUAUAGCUGGCUCCUUAUAAGUCAGUUUCAAGUUCAUUACUAAUAAUGUAACGCU-----------UUACAAAAAAUAAUACAAUUUAUCAGCUUUUAG
.......((((((((.......))))))))....((((((((....))))).)))...-----------................................. ( -11.00, z-score =  -0.77, R)
>droSim1.chrX 13240680 91 - 17042790
CAUUUAUAGCUGACUCCUUAUAAGUCAGUUUCAAGUUCAUUACUAAUAAUGUAACGGC-----------UUUACAAAAAUAAUACAAUUUAUCAUCUUUUAG
.......((((((((.......))))))))....((((((((....))))).)))...-----------................................. ( -11.60, z-score =  -1.73, R)
>consensus
CAAUUAUAGCUGACUCCUUAAAAGUCAGUUUCAAGUUCAUUACUAAUAAUGUAACGCC___________AUUAAUAAUUUAUCAACACGUAUAACCUUUUAG
.......((((((((.......))))))))....(((((((......)))).)))............................................... (-10.36 = -10.24 +  -0.12)

alignment

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secondary structure

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dotplot

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Window 7

Location 17,058,377 – 17,058,477
Length 100
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 72.84
Shannon entropy 0.48426
G+C content 0.30560
Mean single sequence MFE -14.74
Consensus MFE -10.36
Energy contribution -10.24
Covariance contribution -0.12
Combinations/Pair 1.13
Mean z-score -1.46
Structure conservation index 0.70
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.58
SVM RNA-class probability 0.952518
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 17058377 100 - 22422827
GUACAAUUAUAGCUGACUCCUUAAAAGUCAGUUUCAAGUUCAUUACUAAUAAUGUAACGGCUUUACACAA--ACGAAUUAUUUAUCAGCACGUGUACCCUUU
(((((.....((((((((.......))))))))....((((((((....))))).)))............--....................)))))..... ( -16.10, z-score =  -1.46, R)
>droEre2.scaffold_4690 7404780 86 - 18748788
GUAGAAUUAUAGCUGACUCCUAAAAUGUCAGUUUCAAGUUCAUUACUAGCAAUGUAACG----------------AAUGAUUUAUCAACGAGUACACCCUUU
...(((((..(((((((.........)))))))...)))))...........((((...----------------..(((....))).....))))...... ( -14.00, z-score =  -1.11, R)
>droYak2.chrX 15667959 102 - 21770863
GUAGAAUUAUAGCUGACUCCUUAAAAGUCAGUUUCAAGUUCAUUACUAGCAGUGUAACGCCUGUGCACAAUUAUUUAUUAUUUAUAAACGCGUACAACCUUU
((((((((..((((((((.......))))))))...))))).......((.(((((.......))))).....(((((.....))))).)).)))....... ( -20.10, z-score =  -1.89, R)
>droSec1.super_17 900056 91 - 1527944
AUACAUUUAUAGCUGGCUCCUUAUAAGUCAGUUUCAAGUUCAUUACUAAUAAUGUAACGCUUUACAAAAAAUA-AUACAAUUUAUCAGCUUU----------
..........((((((((.......))))))))....((((((((....))))).)))...............-..................---------- ( -11.00, z-score =  -0.87, R)
>droSim1.chrX 13240683 91 - 17042790
GUACAUUUAUAGCUGACUCCUUAUAAGUCAGUUUCAAGUUCAUUACUAAUAAUGUAACGGCUUUACAAAAAUA-AUACAAUUUAUCAUCUUU----------
(((.......((((((((.......))))))))....((((((((....))))).)))...............-.)))..............---------- ( -12.50, z-score =  -1.96, R)
>consensus
GUACAAUUAUAGCUGACUCCUUAAAAGUCAGUUUCAAGUUCAUUACUAAUAAUGUAACGCCUUUACAAAA_UA_AUAUAAUUUAUCAACGCGU__A_CCUUU
..........((((((((.......))))))))....(((((((......)))).)))............................................ (-10.36 = -10.24 +  -0.12)

alignment

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secondary structure

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dotplot

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Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:51:44 2011