| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,056,240 – 17,056,297 |
| Length | 57 |
| Max. P | 0.951170 |
| Location | 17,056,240 – 17,056,297 |
|---|---|
| Length | 57 |
| Sequences | 7 |
| Columns | 58 |
| Reading direction | forward |
| Mean pairwise identity | 83.36 |
| Shannon entropy | 0.30845 |
| G+C content | 0.36934 |
| Mean single sequence MFE | -13.16 |
| Consensus MFE | -9.47 |
| Energy contribution | -9.27 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.40 |
| Mean z-score | -2.23 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.57 |
| SVM RNA-class probability | 0.951170 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17056240 57 + 22422827 CAAUUUUCUCAAGAGCGGAAACGUUGCACUUGAGAGUGAU-GUAAUUACACGAGAAAA ......(((((((((((....))))...)))))))(((((-...)))))......... ( -15.40, z-score = -2.75, R) >droEre2.scaffold_4690 7402554 57 + 18748788 CAAUUUUCUCAAGAGCGGAAACGCUGCACUUGAGUGUGAU-GUAAUUAAACAAAAAAA ..(((..((((((((((....))))...))))))...)))-................. ( -14.90, z-score = -3.03, R) >droYak2.chrX 15665736 57 + 21770863 CAAUUUUCUCAAGAGCGGAAACGUUGCACUUGAAAGUGAU-GUAAUUACACAAGAAAA ...((((((((((((((....))))...)))))..(((((-...)))))....))))) ( -12.50, z-score = -2.00, R) >droSec1.super_17 897877 57 + 1527944 CAAUUUUCUCAAGAGCGGAAACGUUGCCCUUGAAAGUGAU-GUAAUUACACGAGAAAA ...(((((((...((((....))))..........(((((-...)))))..))))))) ( -14.00, z-score = -2.58, R) >droSim1.chrX 13238479 57 + 17042790 CAAUUUUCUCAAGAGCGGAAACGUUGCACUUGAGAGUGAU-GUAAUUACACGAGAAAA ......(((((((((((....))))...)))))))(((((-...)))))......... ( -15.40, z-score = -2.75, R) >dp4.chrXL_group1e 1334397 58 + 12523060 CAUUCUAUUCGACAGCGGAAAUGCUGCACUUGAGAAAGAGAGUAAUUACAUAAGAAUA .(((((....(.(((((....))))))((((........)))).........))))). ( -10.10, z-score = -1.23, R) >droPer1.super_18 175872 55 + 1952607 ---UCUAUUCGACAGCGGAAAUGCUGCACUUGAGAAAGAGAGUAAUUACAUAAGAAUA ---..((((((.(((((....))))))((((........))))..........))))) ( -9.80, z-score = -1.30, R) >consensus CAAUUUUCUCAAGAGCGGAAACGUUGCACUUGAGAGUGAU_GUAAUUACACAAGAAAA .......((((((((((....))))...))))))........................ ( -9.47 = -9.27 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:51:42 2011