| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,047,276 – 17,047,385 |
| Length | 109 |
| Max. P | 0.680685 |
| Location | 17,047,276 – 17,047,385 |
|---|---|
| Length | 109 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 88.17 |
| Shannon entropy | 0.21111 |
| G+C content | 0.60367 |
| Mean single sequence MFE | -42.82 |
| Consensus MFE | -36.26 |
| Energy contribution | -36.46 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.680685 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17047276 109 + 22422827 GAGCUCGGAAACGACGUGAUACCUCUUGGCGCCGGAACGACGGCUGCGAUAUCUUCUGUGAUUCCCGCUGAACCAGGUUUGUGUCGUCAUCCGAACGGAUGGCUGCGUC ......(....)((((((((((..(((((.((((......)))).(((..(((......)))...)))....)))))...)))))(((((((....))))))).))))) ( -42.10, z-score = -2.11, R) >droSim1.chrX 13232598 109 + 17042790 GAGCUCGGAAACGACGUGAUACCUCUUGGCGCCGGGACGACGGCUGCGGUAUCUUCUGUGAUUCCCGCUGAACCAGGUUUGUGUCGUCAUCCGAACGGAUGGCUGCGUC ......(....)((((((((((..(((((.((((......)))).((((.(((......)))..))))....)))))...)))))(((((((....))))))).))))) ( -45.20, z-score = -2.21, R) >droSec1.super_17 888834 109 + 1527944 GAGCUCGGAAACGACGUGAUACCUCUUGGCGCCGGAACGACGGCUGCUGUAUCUUCUGUGAUUCCCGCUGAACCAGGUUUGUGUCGUCAUCCGAACGGAUGGCUGCGUC ......(....)((((((((((..(((((.((((......)))).........(((.(((.....))).))))))))...)))))(((((((....))))))).))))) ( -40.10, z-score = -1.63, R) >droYak2.chrX 15657068 109 + 21770863 CAGCUCGGAGACGAUCGGAUUCCGCUGGGCGCUGGACCGACGGCUGCGUUGUCUCCUCUGAUUGCCGCUGCUCCAGGUGUGCGUCGUCAUCCGAACGGAUGGCCGCGUC (((((((....)))..((...)))))).((((((((.((.((((......(((......))).)))).)).)))).))))((((.(((((((....))))))).)))). ( -43.40, z-score = 0.40, R) >droEre2.scaffold_4690 7394060 109 + 18748788 GAGCUCGGAAACGAUGCGACUCCUCUGGGCGCUGGAACGACGGCUGCGCUGUCUUCUAUGAUGCCCGCUGAUCCAGGUGUGUGUCGUCAUCCGUACGGAUGGCUGUGUC ..(((((....))).))(((......(((((((((((.((((((...))))))))))).).)))))(((......)))....)))(((((((....)))))))...... ( -43.30, z-score = -1.66, R) >consensus GAGCUCGGAAACGACGUGAUACCUCUUGGCGCCGGAACGACGGCUGCGGUAUCUUCUGUGAUUCCCGCUGAACCAGGUUUGUGUCGUCAUCCGAACGGAUGGCUGCGUC ..(((((....)))...(((((..(((((.((((......)))).(((..(((......)))...)))....)))))...)))))(((((((....))))))).))... (-36.26 = -36.46 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:51:41 2011