| Sequence ID | dm3.chr2L |
|---|---|
| Location | 11,639,555 – 11,639,654 |
| Length | 99 |
| Max. P | 0.791861 |
| Location | 11,639,555 – 11,639,654 |
|---|---|
| Length | 99 |
| Sequences | 7 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 83.01 |
| Shannon entropy | 0.31915 |
| G+C content | 0.38090 |
| Mean single sequence MFE | -19.89 |
| Consensus MFE | -14.49 |
| Energy contribution | -14.29 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.70 |
| SVM RNA-class probability | 0.791861 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 11639555 99 + 23011544 UGUAUAUACAUUCACAUCCGGUGGCCAACUUCCGUGUGUCAAGGAGCGCUCAAGCAUUCAUUUAUGAAUUUUUAUUAUUUUUUAU-CUUU---GCCACCAUUC--- ...................((((((..((......))...(((((((......))(((((....)))))...............)-))))---))))))....--- ( -17.50, z-score = -1.09, R) >droSim1.chr2L 11447233 99 + 22036055 CGUAUAUACAUUCACAUCCGGUGGCCAACUUCCGUGUGUCAAGGAGCGCUCAAGCAUUCAUUUAUGAAUUUUUAUUAUUUUUUAU-CUUU---GCCACCAUUC--- ...................((((((..((......))...(((((((......))(((((....)))))...............)-))))---))))))....--- ( -17.50, z-score = -1.27, R) >droYak2.chr2L 8062305 99 + 22324452 UGUAUAUACAUUCACAUCCGGUGGCCAACUUCCGUGUGUCAAGGAGCGCUCAGGCAUUCAUUUAUGAAUUUUUAUUAUUUUUUAU-CUUU---GCCACCAUUU--- ...................((((((......((..((((......))))...)).(((((....)))))................-....---))))))....--- ( -18.10, z-score = -0.81, R) >droAna3.scaffold_12916 9357495 99 - 16180835 CUUAGAUAUCUGCACAUCCGGUGGCCAACUUCCGUGUGUCAAGAAGCGCUCAAGCAUUCAUUUAUGAAUUUUUAUUAUUUUUUAU-CUUU---GCCACCAUUC--- ...................((((((........(.((((......)))).)(((.(((((....))))).)))............-....---))))))....--- ( -17.50, z-score = -1.03, R) >dp4.chr4_group3 2500324 106 + 11692001 CACACACAUAUCCACAUCCGGUGGCUAACUUCCGUGUGUCAAGAAGCGCUCAAGCAUUCAUUUAUGAAUUUUUAUUAUUUUUUAUCUUGCCACAUGGCCACUGCUU ..................(((((((.......((((((.(((((.((......))(((((....)))))...............))))).)))))))))))))... ( -26.11, z-score = -3.12, R) >droPer1.super_1 3980843 106 + 10282868 CACACACAUAUCCACAUCCGGUGGCUAACUUCCGUGUGUCAAGAAGCGCUCAAGCAUUCAUUUAUGAAUUUUUAUUAUUUUUUAUCUUGCCACAUGGCCACUGCUU ..................(((((((.......((((((.(((((.((......))(((((....)))))...............))))).)))))))))))))... ( -26.11, z-score = -3.12, R) >droGri2.scaffold_15252 9464754 103 + 17193109 UAUAUCAACACUCACAUCCGGUGGCUAAAAUCCGUGUGUCAAGAAGCACUCAAGCAUUCAUUUAUGAAUUUUUAUUAUCUUAUUUAUUUU---GCUGCCAUCUUUC ...................((((((........(.((((......)))).).((((.......((((((............))))))..)---))))))))).... ( -16.40, z-score = -1.21, R) >consensus CAUAUAUACAUUCACAUCCGGUGGCCAACUUCCGUGUGUCAAGAAGCGCUCAAGCAUUCAUUUAUGAAUUUUUAUUAUUUUUUAU_CUUU___GCCACCAUUC___ ...................((((((........(.((((......)))).)(((.(((((....))))).)))....................))))))....... (-14.49 = -14.29 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:33:11 2011