| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,045,667 – 17,045,744 |
| Length | 77 |
| Max. P | 0.500000 |
| Location | 17,045,667 – 17,045,744 |
|---|---|
| Length | 77 |
| Sequences | 4 |
| Columns | 77 |
| Reading direction | forward |
| Mean pairwise identity | 98.05 |
| Shannon entropy | 0.03161 |
| G+C content | 0.37013 |
| Mean single sequence MFE | -15.65 |
| Consensus MFE | -15.23 |
| Energy contribution | -15.22 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.99 |
| Structure conservation index | 0.97 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.00 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chrX 17045667 77 + 22422827 AUAUAAUGUUGCAUAUUUGUAGUGUUCACUGCUCAAUUUGGAAUUCCGCUUCAAAUGUGGAUUUGCCUUCGAUUGUC ..................(((((....))))).(((((.((...(((((.......)))))....))...))))).. ( -15.40, z-score = -1.06, R) >droYak2.chrX 15655583 77 + 21770863 AUAUAAUGUUGUAUAUUUGUAGUGUUCACUGCUCAAUUUGGAAUUCCGCUUCGAAUGUGGAUUUGCCAUCGAUUGUC ..................(((((....))))).((((((((...(((((.......)))))....)))..))))).. ( -16.40, z-score = -1.25, R) >droSec1.super_17 887227 77 + 1527944 AUAUAAUGUUGCAUAUUUGUAGUGUUCACUGCUCAAUUUGGAAUUCCGCUUCGAAUGUGGAUUUGCCUUCGAUUGUC ..................(((((....))))).(((((.((...(((((.......)))))....))...))))).. ( -15.40, z-score = -0.83, R) >droSim1.chrX 13230225 77 + 17042790 AUAUAAUGUUGCAUAUUUGUAGUGUUCACUGCUCAAUUUGGAAUUCCGCUUCGAAUGUGGAUUUGCCUUCGAUUGUC ..................(((((....))))).(((((.((...(((((.......)))))....))...))))).. ( -15.40, z-score = -0.83, R) >consensus AUAUAAUGUUGCAUAUUUGUAGUGUUCACUGCUCAAUUUGGAAUUCCGCUUCGAAUGUGGAUUUGCCUUCGAUUGUC ..................(((((....))))).(((((.((...(((((.......)))))....))...))))).. (-15.23 = -15.22 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:51:39 2011