| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,038,364 – 17,038,451 |
| Length | 87 |
| Max. P | 0.789242 |
| Location | 17,038,364 – 17,038,451 |
|---|---|
| Length | 87 |
| Sequences | 12 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 81.46 |
| Shannon entropy | 0.40583 |
| G+C content | 0.36946 |
| Mean single sequence MFE | -14.97 |
| Consensus MFE | -11.18 |
| Energy contribution | -10.71 |
| Covariance contribution | -0.47 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.69 |
| SVM RNA-class probability | 0.789242 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17038364 87 - 22422827 GUCCAAUCUAAUUCUGCAUCAUGGUU------UAUUUAUGUAGUCUCGCUUUUGGACCAGAUCAAA-CUCCAAAUCUCUUAUUAUCCUUGUGCU ((((((.......((((((.(.....------...).))))))........)))))).........-........................... ( -11.56, z-score = -0.72, R) >droSim1.chrX 13219602 87 - 17042790 GUCCAAUCUAAUUCUGCAUCAUGGUU------UAUUUAUGUAGUCUCGCUUUUGGACCAGAUCAAA-CUCCAAAUCUCUUAUUAUCCUUGUGCU ((((((.......((((((.(.....------...).))))))........)))))).........-........................... ( -11.56, z-score = -0.72, R) >droSec1.super_17 880137 87 - 1527944 GUCCAAUCUAAUUCUGCAUCAUGGUU------UAUUUAUGUAGUCUCGCUUUUGGACCAGAUCAAA-CUCCAAAUCUCUUAUUAUCCUUGUGCU ((((((.......((((((.(.....------...).))))))........)))))).........-........................... ( -11.56, z-score = -0.72, R) >droYak2.chrX 15648453 87 - 21770863 GUCCAAUCUAAUUCUGCAUCAUGGUU------UAUUUAUGUAGUCUCGCUUUUGGACCAAAUCAAA-CUCCCAAUCUCUUAUUAUCCUUGUGCU ((((((.......((((((.(.....------...).))))))........)))))).........-........................... ( -11.56, z-score = -1.54, R) >droEre2.scaffold_4690 7385440 87 - 18748788 GUCCAAUCUAAUUCUGCAUCAUGGUA------UAUUUAUGUAGUCUCGCUUUUGGACCAGAGCAAA-CACCCAAUCUUCUAUUAUCCUUGUGCU ((((((.......((((((.(.....------...).))))))........))))))...((((..-.....(((.....))).......)))) ( -12.30, z-score = -0.12, R) >droAna3.scaffold_13248 2276866 88 - 4840945 GUCCAGUCUAAUUCUGCAUCAUGGUU------UAUUUAUGUAGUCUCGCUUUUGGACCAGAACAAAGCUCCAAAUCCUUUAUUAUCCUUGUGCU ((((((.......((((((.(.....------...).))))))........))))))........(((..(((..............))).))) ( -11.50, z-score = 0.35, R) >dp4.chrXL_group1e 8799550 87 + 12523060 GUCCAAUCUAAUUCUGCAUCAUGGUU------UAUUUAUGUAGUCUCGCUUUUGGACAAAACUAAU-CCACAAAUCUUUUAUUAUCCUUGUGCU ((((((.......((((((.(.....------...).))))))........)))))).........-.(((((..............))))).. ( -14.10, z-score = -2.33, R) >droPer1.super_17 1270437 87 + 1930428 GUCCAAUCUAAUUCUGCAUCAUGGUU------UAUUUAUGUAGUCUCGCUUUUGGACAAAACUAAC-CCACAGAUCUUUUAUUAUCCUUGUGCU ((((((.......((((((.(.....------...).))))))........)))))).........-.(((((((........)))..)))).. ( -14.16, z-score = -1.55, R) >droWil1.scaffold_180702 1291362 88 + 4511350 GUCCAAUCUAAUUCUAUCUUAUGAUUAUUGCCUAUUAAGAUAGACUCGCUUUUGGACUAGACAAAUUU------UCUUUUAUUAUCCUUGUGCU ((((((......(((((((((..............))))))))).......))))))...........------.................... ( -15.96, z-score = -2.51, R) >droVir3.scaffold_12970 9769921 91 - 11907090 GUCCAGUCUAAUUCUGCAUCAUGUCACUUGGAUAUUGUUGCAGACUCGCUUUUGGACAAGAGCAA--UG-UAUGUCUUUUAUUAUCCUUGUGCU ((((((......((((((.((((((.....)))).)).)))))).......))))))...((((.--.(-.(((........))).)...)))) ( -22.22, z-score = -1.40, R) >droMoj3.scaffold_6473 5144136 92 + 16943266 GUCCAGUCUAAUUCUGCAUCAGGUCAUUUGGAUACUGUUGGAGACUCGCUUUUGGACAAGAUCAA--UAUUAUGUCUCCUAUUAUCCUUGUGCU ...(((.......))).....((.(((..(((((.....((((((......((((......))))--......))))))...)))))..))))) ( -19.30, z-score = -0.26, R) >droGri2.scaffold_14853 7079365 87 + 10151454 GUCCAGUCUAAUUCUGCAUCAUGUCACUGGGAUAUUGAUGCAGACUCGCUUUUGGACAAUAACA-------AAGUCUUUUAUUAUCCUUGUGCU ((((((......(((((((((((((.....)))).))))))))).......)))))).......-------....................... ( -23.92, z-score = -2.85, R) >consensus GUCCAAUCUAAUUCUGCAUCAUGGUU______UAUUUAUGUAGUCUCGCUUUUGGACCAGAUCAAA_CUCCAAAUCUUUUAUUAUCCUUGUGCU ((((((.......((((((..................))))))........))))))..................................... (-11.18 = -10.71 + -0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:51:29 2011