| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,037,083 – 17,037,176 |
| Length | 93 |
| Max. P | 0.704981 |
| Location | 17,037,083 – 17,037,176 |
|---|---|
| Length | 93 |
| Sequences | 3 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 82.35 |
| Shannon entropy | 0.23698 |
| G+C content | 0.28941 |
| Mean single sequence MFE | -17.11 |
| Consensus MFE | -11.66 |
| Energy contribution | -10.67 |
| Covariance contribution | -0.99 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.704981 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17037083 93 + 22422827 UGUCGUUAAAUGACUAAUGACUAGCCUCCUACAAUAAAUGGAUCUUUUGUUGCUUUGGCAUAGAGUUCUUCAAAAGCGAAGAAUAGAAUAUAU .(((((((......)))))))..(((.....(((((((.......)))))))....))).....(((((((......)))))))......... ( -21.40, z-score = -2.22, R) >droSec1.super_17 878954 86 + 1527944 UGUCAUUAAAUGGCUA-------GCCUCCCACAAUAAAUGGAAAUUUUGUUGAUUUGACAUAGAUUUCCUUAAAAGUAGAGAAAAUAAAAAAU .(((((...)))))..-------..(((..((.......((((((((((((.....)))).))))))))......)).)))............ ( -13.52, z-score = -1.13, R) >droSim1.chrX 13218408 86 + 17042790 UGUCAUUAAAUGACUA-------GCCUCCUACAAUAAAUGGAAAUUUUGUUGAUUUGACAUAGAUUUCCUUAAAAGUAGAGAAAAUAAAAAAU .(((((...)))))..-------...((((((.......((((((((((((.....)))).))))))))......)))).))........... ( -16.42, z-score = -2.93, R) >consensus UGUCAUUAAAUGACUA_______GCCUCCUACAAUAAAUGGAAAUUUUGUUGAUUUGACAUAGAUUUCCUUAAAAGUAGAGAAAAUAAAAAAU .(((((...))))).........................((((((((((((.....)))).))))))))........................ (-11.66 = -10.67 + -0.99)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:51:27 2011