| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,016,343 – 17,016,434 |
| Length | 91 |
| Max. P | 0.739704 |
| Location | 17,016,343 – 17,016,434 |
|---|---|
| Length | 91 |
| Sequences | 3 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 79.15 |
| Shannon entropy | 0.28569 |
| G+C content | 0.27565 |
| Mean single sequence MFE | -21.60 |
| Consensus MFE | -13.57 |
| Energy contribution | -13.90 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.739704 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17016343 91 + 22422827 UAGCGUAUUUUCAUAGGUGCAGCUAACUGAUAU-AUUUAUGUUUAAUGCGUUUAACUCUAAAAACAUU-----ACAUUAUUAUUCAGUUUUGAAUAA ((((((((((....)))))).))))(((((.((-(...((((..((((..((((....))))..))))-----))))...))))))))......... ( -16.20, z-score = -1.26, R) >droSec1.super_17 858390 94 + 1527944 UAGCGUAUUUUCAUAGGUGCAGCUAACUGAUAUGAUGUACAU---AUGCAUGUACAUGUAUGUACAUACAUUAUUAUUAUUAUUCAGUUUUGAAAAU ((((((((((....)))))).))))(((((.((((((.....---(((.(((((((....))))))).)))......)))))))))))......... ( -22.90, z-score = -1.55, R) >droSim1.chrX 13199403 84 + 17042790 UAGCGUAUUUUCAUAGGUGCAGCUAACUGAAAUGAUGUACAU---AUGCAUGUACAUGUAUGUACAU----------UAUUAUUCAGUUUUGAAAAU ((((((((((....)))))).))))(((((((((((((((((---..((((....))))))))))))----------)))..))))))......... ( -25.70, z-score = -3.48, R) >consensus UAGCGUAUUUUCAUAGGUGCAGCUAACUGAUAUGAUGUACAU___AUGCAUGUACAUGUAUGUACAU________AUUAUUAUUCAGUUUUGAAAAU ((((((((((....)))))).))))(((((.((((((........(((.(((((....))))).)))..........)))))))))))......... (-13.57 = -13.90 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:51:26 2011