| Sequence ID | dm3.chrX |
|---|---|
| Location | 16,987,843 – 16,987,948 |
| Length | 105 |
| Max. P | 0.953136 |
| Location | 16,987,843 – 16,987,948 |
|---|---|
| Length | 105 |
| Sequences | 4 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 70.65 |
| Shannon entropy | 0.47631 |
| G+C content | 0.47587 |
| Mean single sequence MFE | -31.57 |
| Consensus MFE | -17.75 |
| Energy contribution | -20.38 |
| Covariance contribution | 2.62 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.59 |
| SVM RNA-class probability | 0.953136 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 16987843 105 - 22422827 -AGGGUGUUCAAGGAGUCGCCUUUCCAAA-UUUAGGCGGUUUGCAAGUAACGAAAGUAUAGAGGUAGGCCAUGGGUUCGGAAAGGGGGGUGAUACCA-UACCCUUGAA -(((((((....((.(((((((((((.((-((((...(((((((.....((....))......))))))).)))))).))))....))))))).)))-)))))).... ( -36.50, z-score = -2.68, R) >droSim1.chrX 13167054 107 - 17042790 -AGGGUAUUCAGGCAGUCGCAUUUCCAAAUUUUUGGUGCCUUGCAAGUAACGGAAGUAUAGAGGUAGGCCAUGGGUUGGGUAAGGGGGGCGAUACCAUUACCCUUGAA -((((((....((..(((((.(..((.((((..(((((((((....(((.(....)))).)))))..))))..))))......))..)))))).))..)))))).... ( -32.10, z-score = -0.63, R) >droSec1.super_17 820905 107 - 1527944 -AGGGUAUUCAGGCAGUCGCCUUUCAAAAUUUUGGGUGGCUUGCAAGUAACGGAAGUAUAGAGGUAGGCCAUGGGUUGGGUAAGGGGGACGAUACCAUUACCCUUGAA -((((((....((..(((.((((((..(((((...(((((((((.....((....))......))))))))))))))..).))))).)))....))..)))))).... ( -36.60, z-score = -2.43, R) >droYak2.chrX 15598969 83 - 21770863 AAGGGUAUUGAAGGAGUCGUUAUUUCAAAUAUUUAG---------------GAAACUACAUGGGC---------GCGGAAAAGGGGGGGCAAUGUCA-UACCCUUGAG ((((((((.((....(((.((.((((...(((.(((---------------....))).)))...---------...))))...)).)))....)))-)))))))... ( -21.10, z-score = -1.99, R) >consensus _AGGGUAUUCAAGCAGUCGCCUUUCCAAAUUUUUGGUGGCUUGCAAGUAACGAAAGUAUAGAGGUAGGCCAUGGGUUGGGAAAGGGGGGCGAUACCA_UACCCUUGAA .((((((.....((.((((((((((..........(((((((((.....((....))......)))))))))...........)))))))))).))..)))))).... (-17.75 = -20.38 + 2.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:51:25 2011