| Sequence ID | dm3.chrX |
|---|---|
| Location | 16,983,050 – 16,983,103 |
| Length | 53 |
| Max. P | 0.967316 |
| Location | 16,983,050 – 16,983,103 |
|---|---|
| Length | 53 |
| Sequences | 6 |
| Columns | 66 |
| Reading direction | forward |
| Mean pairwise identity | 63.49 |
| Shannon entropy | 0.59320 |
| G+C content | 0.43820 |
| Mean single sequence MFE | -12.03 |
| Consensus MFE | -9.42 |
| Energy contribution | -8.70 |
| Covariance contribution | -0.72 |
| Combinations/Pair | 1.42 |
| Mean z-score | -0.94 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.78 |
| SVM RNA-class probability | 0.967316 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 16983050 53 + 22422827 CGUCUCGGAUAUGGCGACAAUGUCUAAAUCCGGAGACGACUCUUCAGAUCUUU------------- ((((((((((..(((......)))...)))).))))))...............------------- ( -15.40, z-score = -1.70, R) >droPer1.super_30 896458 66 - 958394 CACUUUGGAUAUGGUGACAAAAUCUGAGCCCAAAAACCAAAACCACAAACAAAACCCCACAUUUUU ...((..(((.((....))..)))..))...................................... ( -5.70, z-score = 0.51, R) >dp4.chrXL_group1e 1133210 66 + 12523060 CACUUUGGAUAUGGUGACAAAAUCUGAGCCCAAAAACCAAAACCACAAACAAAAACCCACAUUUUU ...((..(((.((....))..)))..))...................................... ( -5.70, z-score = 0.50, R) >droEre2.scaffold_4690 7335707 53 + 18748788 CGUCUCGGAUAUGGCGACCAUGUCUAAGUCUGGAGACUACUCUUCGUAUCUUU------------- .(.((..(((((((...)))))))..)).).(((((....)))))........------------- ( -14.60, z-score = -1.54, R) >droSec1.super_17 816126 53 + 1527944 CGUCUCGGAUAUGGCGACAAUGUCUAAAUCCGGAGACGACUCUUCAGAUCUUU------------- ((((((((((..(((......)))...)))).))))))...............------------- ( -15.40, z-score = -1.70, R) >droSim1.chrX 13162248 53 + 17042790 CGUCUCGGAUAUGGCGACAAUGUCUAAAUCCGGAGACGACUCUUCAGAUCUUU------------- ((((((((((..(((......)))...)))).))))))...............------------- ( -15.40, z-score = -1.70, R) >consensus CGUCUCGGAUAUGGCGACAAUGUCUAAAUCCGGAGACGACUCUUCAGAUCUUU_____________ .(((((((((..(((......)))...)))).)))))............................. ( -9.42 = -8.70 + -0.72)
| Location | 16,983,050 – 16,983,103 |
|---|---|
| Length | 53 |
| Sequences | 6 |
| Columns | 66 |
| Reading direction | reverse |
| Mean pairwise identity | 63.49 |
| Shannon entropy | 0.59320 |
| G+C content | 0.43820 |
| Mean single sequence MFE | -12.48 |
| Consensus MFE | -7.51 |
| Energy contribution | -5.90 |
| Covariance contribution | -1.61 |
| Combinations/Pair | 1.55 |
| Mean z-score | -0.81 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.82 |
| SVM RNA-class probability | 0.826462 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 16983050 53 - 22422827 -------------AAAGAUCUGAAGAGUCGUCUCCGGAUUUAGACAUUGUCGCCAUAUCCGAGACG -------------...............((((((.((((...(((...))).....)))))))))) ( -13.70, z-score = -1.36, R) >droPer1.super_30 896458 66 + 958394 AAAAAUGUGGGGUUUUGUUUGUGGUUUUGGUUUUUGGGCUCAGAUUUUGUCACCAUAUCCAAAGUG ............(((((..((((((..(((..((((....))))..)))..))))))..))))).. ( -12.50, z-score = -0.16, R) >dp4.chrXL_group1e 1133210 66 - 12523060 AAAAAUGUGGGUUUUUGUUUGUGGUUUUGGUUUUUGGGCUCAGAUUUUGUCACCAUAUCCAAAGUG ............(((((..((((((..(((..((((....))))..)))..))))))..))))).. ( -12.50, z-score = -0.41, R) >droEre2.scaffold_4690 7335707 53 - 18748788 -------------AAAGAUACGAAGAGUAGUCUCCAGACUUAGACAUGGUCGCCAUAUCCGAGACG -------------.....(((.....)))(((((..((((.......)))).........))))). ( -8.80, z-score = -0.21, R) >droSec1.super_17 816126 53 - 1527944 -------------AAAGAUCUGAAGAGUCGUCUCCGGAUUUAGACAUUGUCGCCAUAUCCGAGACG -------------...............((((((.((((...(((...))).....)))))))))) ( -13.70, z-score = -1.36, R) >droSim1.chrX 13162248 53 - 17042790 -------------AAAGAUCUGAAGAGUCGUCUCCGGAUUUAGACAUUGUCGCCAUAUCCGAGACG -------------...............((((((.((((...(((...))).....)))))))))) ( -13.70, z-score = -1.36, R) >consensus _____________AAAGAUCUGAAGAGUCGUCUCCGGACUUAGACAUUGUCGCCAUAUCCGAGACG .............................(((((.(((....(((...)))......)))))))). ( -7.51 = -5.90 + -1.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:51:24 2011