| Sequence ID | dm3.chrX |
|---|---|
| Location | 16,976,427 – 16,976,528 |
| Length | 101 |
| Max. P | 0.870222 |
| Location | 16,976,427 – 16,976,528 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 73.40 |
| Shannon entropy | 0.51875 |
| G+C content | 0.58098 |
| Mean single sequence MFE | -41.00 |
| Consensus MFE | -22.99 |
| Energy contribution | -24.10 |
| Covariance contribution | 1.12 |
| Combinations/Pair | 1.52 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.00 |
| SVM RNA-class probability | 0.870222 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 16976427 101 + 22422827 GCUGUGAUUUUGGAUGCGGUCAGGCCCAUGGCGUUGAUCCCGGAAGCUUUCUAGGUCCGGGAACCAUGGGAACUGGUCCAUUAAUAUUGACAACGGGAUCA .((((..((...((((.(..(((.(((((((......(((((((..((....)).))))))).)))))))..)))..)))))......))..))))..... ( -36.70, z-score = -1.34, R) >droAna3.scaffold_13334 791723 93 - 1562580 GAUGUGAUGCCGGAUGUGCCACCGCCCACGGCCAGGGCUCCGUCAGCAGU---GAUCCG-----UAUGGUGGCGUUGUCACGGGUAUGGGCACCGGUAUUG .....((((((((...((((...((((((((.((..(((.....)))..)---)..)))-----)...(((((...)))))))))...)))))))))))). ( -37.60, z-score = 0.13, R) >droEre2.scaffold_4690 7329274 101 + 18748788 GCUGUGAUGCCGCAUGCGGCGAGGCCCAUGGCAUUGAUCCCGGCAGCUUUUUCCUUCCGGGAACCAUGGGCAAUGGUCCGUUGAUAUUGGCACCGGGUUCA ........((((....))))(((((((((((......((((((.((.......)).)))))).))))))))..(((((((.......))).))))..))). ( -39.90, z-score = -0.37, R) >droYak2.chrX 15587584 101 + 21770863 GCUGUGAUGCCGCCUGCGGUGAGGCACAUGGCGUUGAUCCCGGUAGCUUUGUCUAUCCGGGAACGCUGGGCAAUGCACCGUUAAUCUUGGCACCGGCAUCA ....((((((((((.((((((..((...((((((...(((((((((......))).)))))))))))).))....)))))).......)))...))))))) ( -44.10, z-score = -1.96, R) >droSec1.super_17 809642 101 + 1527944 GCUGUGAUUUCGGAUGCGGCCAGGCCCAUGGCGUUGAUCCCGGAAGCUUUCUAGGUUCGGGAACCAUGGGUACUGGUCCCUUAACAUUGGCAACGGGAUCA ....((((..((..(((((((((((((((((......(((((((..((....)).))))))).)))))))).)))))).(........)))).))..)))) ( -42.50, z-score = -2.21, R) >droSim1.chrX 13154410 101 + 17042790 GCUGUGAUUUCGGAUGCGGCCAGGCCCAUGGCGUUGAUCCCGGAAGCUUUCUAGGUUCGGGAACCAUGGGUACUGGCCCCUUAACAUUGGCAACGGGAUCA ....((((..((..(((((((((((((((((......(((((((..((....)).))))))).)))))))).)))))).(........)))).))..)))) ( -45.20, z-score = -2.68, R) >consensus GCUGUGAUGCCGGAUGCGGCCAGGCCCAUGGCGUUGAUCCCGGAAGCUUUCUAGGUCCGGGAACCAUGGGCACUGGUCCAUUAAUAUUGGCAACGGGAUCA ....((((((((..(((((((..((((((((......((((((.............)))))).))))))))...))))...........))).)))))))) (-22.99 = -24.10 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:51:23 2011