| Sequence ID | dm3.chrX |
|---|---|
| Location | 16,976,208 – 16,976,313 |
| Length | 105 |
| Max. P | 0.752179 |
| Location | 16,976,208 – 16,976,313 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 63.17 |
| Shannon entropy | 0.68096 |
| G+C content | 0.61640 |
| Mean single sequence MFE | -36.46 |
| Consensus MFE | -16.33 |
| Energy contribution | -16.78 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.64 |
| Mean z-score | -0.95 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.752179 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 16976208 105 - 22422827 CAGCGGCAACUUGUUGUUGUCGCGCCGCCCAACCAUGGUGGCAGGCUCCCAC---------GCUCCUCUCACUCUCACCCCUGUUGCCAUUAUUGUAAUCCCCGUUGGACAUCA ..((((((((.....))))))))...(.(((((.((((..(((((.......---------..................)))))..)))).............))))).).... ( -30.45, z-score = -1.48, R) >droAna3.scaffold_13334 791513 95 + 1562580 CACCGUCGACCCGGGCUGACUGU----UCCAGCCGCCGUGGCAGGUCGGCGC--------CGAGCUCAACG-UCCGGCCCUGGUUGGCCUGGCCGAGCUCCUCGUAGG------ ...((((((((..(((((.....----..)))))((....)).)))))))).--------.((((((...(-((.((((......)))).))).))))))........------ ( -44.50, z-score = -0.79, R) >droEre2.scaffold_4690 7329058 102 - 18748788 CAGAGGUAGUUUGACGUUGCCGCUGCGUCCAGCCACGGCGACAGGCUCCCAU---------ACUCUGACUGCUCGGUCCCCGUGCGUCGUUACUGUCAU---CGCUGGAUAGCG ....(((((.......)))))(((..(((((((.((((..((.((...))..---------.....(((.((.(((...))).)))))))..))))...---.)))))))))). ( -32.50, z-score = 0.75, R) >droYak2.chrX 15587359 111 - 21770863 CAGCGCCAGUUGGCGGUUGACGCGCCGUCCAGCCAUGGCGGCAGGCGCCCAUGCUCUGGCCACUCUGUCCACUCUGUCCUCGGUUGUCUUCGCUGUCAU---CGUUGGAUAUCA (((((((....))).)))).......(((((((.(((((((((((((((...((..(((.(.....).)))....))....)).)))))..))))))))---.))))))).... ( -37.10, z-score = 0.96, R) >droSec1.super_17 809422 105 - 1527944 CAGCGGCAGCUUGUUGUUGCCGCAUCGCCCAGCCAUGGUGGCAGGCUCCCAA---------GCUCCUCUCACUUAUACCCCUGUUGCCAUUGUUGUAAUCCCCGUUGGACAUCA ..((((((((.....))))))))......((((.((((..(((((.....((---------(.........))).....)))))..)))).))))...(((.....)))..... ( -37.10, z-score = -2.57, R) >droSim1.chrX 13154191 105 - 17042790 CAGCGGCAGCUUGUUGUUGCCGCAUCGCCCAGCCAUGGUGGCAGGCUCCCAA---------GCUCCUCUCACUUAUACCCCUGUUGCCAUUGUUGUAAUCCCCGUUGGACAUCA ..((((((((.....))))))))......((((.((((..(((((.....((---------(.........))).....)))))..)))).))))...(((.....)))..... ( -37.10, z-score = -2.57, R) >consensus CAGCGGCAGCUUGUUGUUGCCGCACCGCCCAGCCAUGGUGGCAGGCUCCCAA_________GCUCCUCUCACUCAGACCCCGGUUGCCAUUGCUGUAAUCCCCGUUGGACAUCA ..((((((((.....))))))))......((((.((((((((.((..................................)).)))))))).))))................... (-16.33 = -16.78 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:51:22 2011