Locus 15015

Sequence ID dm3.chrX
Location 16,975,640 – 16,975,757
Length 117
Max. P 0.876117
window20687

overview

Window 7

Location 16,975,640 – 16,975,757
Length 117
Sequences 4
Columns 117
Reading direction forward
Mean pairwise identity 87.61
Shannon entropy 0.20278
G+C content 0.57692
Mean single sequence MFE -42.90
Consensus MFE -33.22
Energy contribution -35.60
Covariance contribution 2.38
Combinations/Pair 1.16
Mean z-score -2.18
Structure conservation index 0.77
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.02
SVM RNA-class probability 0.876117
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 16975640 117 + 22422827
UCCUCGCGUAAAUACGUGUGCUCCAAAUCAAACUCUUCAGUUGGAGGAGGAGUAGAGGAAGACAGUGGCUCAUCAUUGCCUGCCACCGCCAAAGCGUUACUCCUCCAGCCGGACGGU
(((.(((((....))))).(((((((...((....))...)))))((((((((((.((.((.((((((....)))))).)).))..(((....))))))))))))).)).))).... ( -37.90, z-score =  -1.34, R)
>droSim1.chrX 13153632 117 + 17042790
UCCUCGCGUAAAUACGUGCGCUCCAAAUCGAAUCCAUCAGUUGGAGGAGGAGUAGCGGAAGGCAGUCCUUCAGCAUUGCCUGCCACCGCCAAAGCGAUACUCCUCCAGCCGGACGGU
.((..(((((......)))))(((........((((.....))))(((((((((..((.(((((((.(....).))))))).))..(((....))).)))))))))....))).)). ( -45.40, z-score =  -3.10, R)
>droSec1.super_17 808863 117 + 1527944
UCCUCGCGUAAAUACGUGCGCUCCAAAUCGAAUCCAUCAGUUGGAGGAGGAGUAGCGGAAGGCAGUCCUUCAGCAUUGCCUGCCACCGCCAAAGCGGUACUCCUCCAGCCGGACGGU
.((..(((((......)))))(((........((((.....))))((((((((...((.(((((((.(....).))))))).))(((((....)))))))))))))....))).)). ( -48.50, z-score =  -3.60, R)
>droEre2.scaffold_4690 7328505 117 + 18748788
UCCUCGCGCCAAUACGUACGCUCCAAAUCGAAUCCCUCUGUGGGAGGAGGAGCAGCAGAGGGCAGUGGCUCAUCAUCGCCAGCCACCGCCAAAGCGCUUCCCCUUCAGCCAGACGGU
.....(((..........)))............((.((((..(((((.(((((.((....(((.((((((..........)))))).)))...))))))).)))))...)))).)). ( -39.80, z-score =  -0.67, R)
>consensus
UCCUCGCGUAAAUACGUGCGCUCCAAAUCGAAUCCAUCAGUUGGAGGAGGAGUAGCGGAAGGCAGUCCCUCAGCAUUGCCUGCCACCGCCAAAGCGAUACUCCUCCAGCCGGACGGU
....((((......))))((.(((........((((.....))))(((((((((((((.(((((((((....))))))))).))...((....)))))))))))))....))))).. (-33.22 = -35.60 +   2.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:51:21 2011